BAC Information

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BAC

Clone NameMSMg01-068A15
Chromosome5 (Build37)
Map Location 150,964,658 - 150,964,948
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2
Downstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068A15.T7 (MSMg01no068_a15.b1)MSMg01-068A15.TJ (MSMg01no068_a15.g1)
ACCAG292628AG292629
length703714
length of high quality
(start - end)
617 (45 - 661)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no068_a15.b1 PHD_FILE: MSMg01no068_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:20 2005CHROMAT_FILE: MSMg01no068_a15.g1 PHD_FILE: MSMg01no068_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTTATATCTGTTCCCCCACTTTTCAAATTGGATTATTTGTTT
TTTTGATATCTAGTTCCTTGAGTTCTTCCTATATTTTGTATATTAGTCTT
CTATCAGGTACGAAGTTGGTAAAAAATCTTTTCCCTTTCTGTAGGCTGCT
GTTTTGACAGTGACCTTTGACACACATAAGCTTTTCAGTTTCTTGAAGTC
TATCTTATTATTGATCTAGTGCCTACGCTATAGCTGTTCTGTTCAAAGTC
ATCTCCTGTACCGATGCATTCAAGGATATCCCCCACTTTTGCTTCTGTTA
GATTCGGTGGCTCTGGTTTTATGTTGTAGCCTTTGATCTACTTGGACTTG
AGTTTTGTACAAGGTGATTAAAATAGATCTATTTGCACTCTTCTACATGC
AGACATCCAATTTGACCAGCATCATTTGTTGAAGATGCTGGGTTTTCCTG
CACCCTTACCCCATACTGGGTGTTTCTGGCTTTATCAAAAATCAGATGTC
CATAGATGTGTGGATTTAAGTCTGGACTTTAATTCCATTGATCAACGTGT
CTAATTTTGTGCCAATACCATATGGCTTATTATTATAGCTCTGATGTACA
ACTTGAAATTGGAAATGGTGGGACCTCCAGCAGTTCTTTCACTGTTCAGG
ATT
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAGTGCCGTGTGATGAGGACTTTT
AAATAAATCATAAAAAACATAAGAAATAAAAAAAGATGTAATAAAATCTG
TCCTCTCAGACCTATTTTTCATGAAAAAAAATTGTTTTCCTGCCAGAACA
CATAAGGTTGGGAGTAAATATAATTTTTATGAAGTCAATAGGATCCAGAA
TTTCAACTGCGTGTAATGACATGCATCTGTAAACCTGGGAGATAGGGGCA
GGAAGGCCACAAGTTTGTGGTTAGCTGGCGTACATAGTGAGAGGCTATCT
CAAAAACCACGGCTCCTCTTTGTGTGCGCCAGCACATGGATTTAATCCCA
GTACTCAGAGACGCAGAGGCAGATGGAACTCAGAAAGTTTAAGGTCTGGC
TGGCTTACATAGTGAATTCCAGAGCAGTCAAGGGGTACACAGTGAGACCC
TGCCTCTAAATTTAATTAATTAATTAGCTAACCACTCCCAACTCCAAATT
GCTAAAAAAAAAAAAAAAAAAAAAAAATCTTGGCAATGCCATTATATCAG
GCCAGGTTAATATATATCTGTTCAAATAATAACAACATCTCAAACTACCA
TTCTCAAGATAATTAAAATGACGTACAACATATTNAACTATTTACTCCAT
TTTTTTAAATTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_a15.g1 MSMg01no068_a15.g1 CHROMAT_FILE:
MSMg01no068_a15.g1 PHD_FILE: MSMg01no068_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:20 2005
         (292 letters)



>mm_chr5_150964570_150965261
          Length = 692

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   tagtgccgtgtgatgaggacttttaaataaatcataaaaaacataagaaataaaaaaaga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 379 tagtgccgtgtgatgaggacttttaaataaatcataaaaaacataagaaatcaaaaaaga 320

                                                                       
Query: 62  tgtaataaaatctgtcctctcagacctatttttcatgaaaaaaaattgttttcctgccag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtaataaaatctgtcctctcagacctatttttcatgaaaaaaaattgttttcctgccag 260

                                                                       
Query: 122 aacacataaggttgggagtaaatataatttttatgaagtcaataggatccagaatttcaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aacacataaggttgggagtaaatataatttttatgaagtcaataggatccagaatttcaa 200

                                                                       
Query: 182 ctgcgtgtaatgacatgcatctgtaaacctgggagataggggcaggaaggccacaagttt 241
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctgcgtgtaatgacacgcatctgtaaacctgggagataggggcaggaaggccacaagttt 140

                                                              
Query: 242 gtggttagctggcgtacatagtgagaggctatctcaaaaaccacggctcct 292
           ||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 139 gtggttagctggcgtacatagagagaggctatcttaaaaaccacggctcct 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)