BAC Information

Click to search

BAC

Clone NameMSMg01-068C08
Chromosome5 (Build37)
Map Location 59,403,133 - 59,403,402
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499
Downstream geneEG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068C08.T7 (MSMg01no068_c08.b1)MSMg01-068C08.TJ (MSMg01no068_c08.g1)
ACCAG292708AG292709
length793818
length of high quality
(start - end)
271 (120 - 390)294 (140 - 433)
definitionCHROMAT_FILE: MSMg01no068_c08.b1 PHD_FILE: MSMg01no068_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:28 2005CHROMAT_FILE: MSMg01no068_c08.g1 PHD_FILE: MSMg01no068_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCCCTTTTTNTTCCCCCCTTTTTTTTTTTTTTTCTTTTTCCTT
CCTTACCTCTCCCCCTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTCCAGAATCCGCGNGATTCCATACTATATTTCCTATGAAACTAGTATC
TACATACAATTTAAAAGCATGATAGTATAAGAATAATGATATTTATTAGA
AACATAAGTGAATCATATAATGATTGAAATCTGAAGTGGCAAACTGAGCA
AAGTTTTTTACTCCAAATGATAAAGTTTGAAAGAATCACATTCCTATTAT
TGGAAAGTTACCTTAAACAGCTTAGCTATCATGGAAAAATTAGTTCTGCC
TTGAGAGACTAGAGAAGACTACCAATATATAGAAATTAAAAAAAATTAGC
ACCCATAGACTTCCTATTAGATATTAGTTAATTGGTCTTGTATGTGACAA
TGAATATGCTTAGTTGAAAATACAGACAACATAGTCTCCAACTGTTATAG
CACAGTAGCATATTCACTGTTCATGATCGATATGGAATAAGATCATTACT
CTGCTAAATTTCTGCCGTGATTAATAATCCCCTACACTAGAATGACAATA
ACACATGTGTTACTTGTTTGAAACCATTACGTAATGATTAGTTTCCCTAG
GCTAGATTTATACGGACAGAAAATACTATTTTATACCAGCTCCAAGTTTT
ATTCTCGATACAAACTTTCTCCTATTTCAATGAAAAGTCTTTTGTATCTT
TATTCCCCTTTTTTTTTTTGCACATTTACACTTTTGGTCACAG
TTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTNNT
GATTCTTCTCTTTNCCCGCGATGCTATGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCCAATTCACTCCTAG
TCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGGCAAGCAAAGAAT
CGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACGCTGGGGGTTAT
AAAAGCAGCGCCATTTTCCTGGTTCGAAATCTTCCTGAAGAAGTAAGCAA
TAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGT
CGAGCGGGACGCAATATGAATGTTGGCTTTCTATTGTTTATGTTGTTATT
GAAGATCAGTTTTAGTTCATGGTTATATGATAGGATGTATGGGACAATTT
CTATATTTTGATTCTGTTGAGGCCTGTTTTTTGACCATTTATATGGTCAG
TTTTGGAGAAGGTACCTTGAGGTGCTGAGAATAAGGTATCTCTCTTCGTT
TTAAGATAATTGTTCTGCACATATCTGTTTAATCCATTTGTTTTAAAGTT
TCATGTATTTTTCTGCGCTCCTGTTTCAGTTTTTGTTTTTACATATCTGT
TTCATTTGACGCATAGTAACCGTGTTTGATATTTTTCCCCCCTACTTATT
TGTTGTTGAGTCTGCTAACCGAGGTGCTTTTTGTACGCTGTTTACCAAAC
AGCCTTTAATTGCTTTTTGGATATGAGGGTCTCGGGCCCATATGATATAT
TTAGTGAATTTCATCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_c08.b1 MSMg01no068_c08.b1 CHROMAT_FILE:
MSMg01no068_c08.b1 PHD_FILE: MSMg01no068_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:28 2005
         (271 letters)



>mm_chr5_59402933_59403602
          Length = 670

 Score =  466 bits (241), Expect = e-136
 Identities = 264/273 (96%), Gaps = 5/273 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatactatatt--tcctatgaaactagtatctacatacaatttaaaagcatgatagta 58
           ||||||||||| |  |  ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tccatactataataat--tatgaaactagtatctacatacaatttaaaa-catgatagta 257

                                                                       
Query: 59  taagaataatgatatttattagaaacataagtgaatcatataatgattgaaatctgaagt 118
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 258 taagaataatgatatttattacaaacataagtgaatcatataatgattgaaatctgaagt 317

                                                                       
Query: 119 ggcaaactgagcaaagttttttactccaaatgataaagtttgaaagaatcacattcctat 178
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 318 ggcaaactgagcaaagttttttactccaaatgataaagcttgaaagaatcacattcctat 377

                                                                       
Query: 179 tattggaaagttaccttaaacagcttagctatcatggaaaaattagttctgccttgagag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tattggaaagttaccttaaacagcttagctatcatggaaaaattagttctgccttgagag 437

                                            
Query: 239 actagagaagactaccaatatatagaaattaaa 271
           |||||||||||||||||||||| ||||||||||
Sbjct: 438 actagagaagactaccaatatacagaaattaaa 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 670
Length adjustment: 9
Effective length of query: 262
Effective length of database: 661
Effective search space:   173182
Effective search space used:   173182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)