CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAATTTATTTATAGGTGTTTCATTCTCTCTCCCAGTTCCCTTC
TCCTCTCAATATAACCTAGGAGGTGACAATATGTTCAATTGTCACATCCC
TTTGGTGTTGCCTCACCTATGATTTTTATTTGGTTTTTTTTATTTTGCCT
TACTTTAAAAAAAAAACAATTTAAGAGGTATTGGTGTTTTCTAGTTGGTT
TCTCAATGTGTGTTCGATATGCTTTTATTTTTATTTTTTTTTAAATGAAA
GGTAAATTGTACTGAACTTGTGAATTTGAAATTTGAAGTAAGATAACCAC
AAAGGTAAGGTCTGTATTTTTCACCCCACCCCCGCTGAAGGCAAGATAAC
AAGTTCAGTTCTCATTAAAAGGGTGGAAATGAAACCTTATCATCAGTGAT
TAGCTAGTTGCTGTACAAAACACTTATAAGTCCTTACTATACAATATCTA
AGCATTTATCCATGTTCATGAGTATGGATTCACAGATCTTTATATTGTAT
TGTATTATAGGCTATGACTCATTACTACATTGTTTATTTCATTTCCCAAA
GAATTTCCTATTTGGCCATGGAACTTATTTGGATTGGCTGTGATTGTCTC
CGAGTCTTCACCACTTTATGTTCAATCACTCGGTATTACTTTCTAGTCCT
ATAAGATTCT

TATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCATGACAAGGTTCCAGACA
TAACTATGGTCCTGTAATGCTGATAGTGAGTCTGCAATATTCCTCTTGCT
CAGTACATTTACTGTACCTTTTATGTCATTAGATGTTTTCATACACACAA
ATGCCATTTTGCCACATCTGCAAACCTTACTTAGTACATGCTACATGTAA
GATACAGAGTCTATAGCATACAAGGGCATCATAGGTTCTACTATCTATGT
TTTTGCAAGCTTACTCAGTGATATTCTTACCATCACAGATTAAATAATGA
TGCATTTCTCAGGTTTTTTTTTTACCCCCCCCCCCCCAACAAACATAGTA
AATTTTTGTAGCTTTCTTCCTACTCAATAATAAAAATAAAAAATAGTGTG
GGGGGTTTCCTTACCTTGTTTTCATTAATGATGTATTATTTAGTTTTCTA
TTATTGTGCTGAATACCACAGCTACATCCTTATTATAGAGCAACGACCTC
ATTTTCTTTTGCACTTCACGTGTCACCCTGTTACCCCGTTCTTTACTGTT
AACTTTGGCATCGAACCTGTTTTTCTCCATCTCTATTTACACGCCCTGTT
ACAAACCCCTACCACCTGTACTTATTTTCTCACTACTCGCCTCTTTTTTT
GCTTTTCCCCCCATTTACCTTATCGACTAN

Query= MSMg01no068_e13.b1 MSMg01no068_e13.b1 CHROMAT_FILE:
MSMg01no068_e13.b1 PHD_FILE: MSMg01no068_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:39 2005
         (320 letters)



>mm_chr5_82035102_82035821
          Length = 720

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacaatttatttataggtgtttcattctctctcccagttcccttctcctctcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaattccacaatttatttataggtgtttcattctctctcccagttcccttctcctctcaa 368

                                                                       
Query: 65  tataacctaggaggtgacaatatgttcaattgtcacatccctttggtgttgcctcaccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tataacctaggaggtgacaatatgttcaattgtcacatccctttggtgttgcctcaccta 308

                                                                       
Query: 125 tgatttttatttggttttttttattttgccttactttaaaaaaaaaacaatttaagaggt 184
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 307 tgatttttatttggttttctttattttgccttacttaaaaaaaaaaacaatttaagaggt 248

                                                                       
Query: 185 attggtgttttctagttggtttctcaatgtgtgttcgatatgcttttatttttatttttt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 247 attggtgttttctagttggtttctcaatgtgtgttcgatatgcttttattattatttttt 188

                                                                       
Query: 245 tttaaatgaaaggtaaattgtactgaacttgtgaatttgaaatttgaagtaagataacca 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 187 tttaaatgaaaggtaaattgtactgaacttgtaaatttgaaatttgaagtaagataacca 128

                          
Query: 305 caaaggtaaggtctg 319
           |||||||||||||||
Sbjct: 127 caaaggtaaggtctg 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no068_e13.g1 MSMg01no068_e13.g1 CHROMAT_FILE:
MSMg01no068_e13.g1 PHD_FILE: MSMg01no068_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:40 2005
         (287 letters)



>mm_chr5_81897878_81898564
          Length = 687

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcatgacaaggttccagacataactatggtcctgtaatgctgatagtgagtctgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcatgacaaggttccagacataactatggtcctgtaatgctgatagtgagtctgcaa 260

                                                                       
Query: 61  tattcctcttgctcagtacatttactgtaccttttatgtcattagatgttttcatacaca 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tattcctcttgctcagtacatttactgtaccttttatgtcattacatgttttcatacaca 320

                                                                       
Query: 121 caaatgccattttgccacatctgcaaaccttacttagtacatgctacatgtaagatacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatgccattttgccacatctgcaaaccttacttagtacatgctacatgtaagatacag 380

                                                                       
Query: 181 agtctatagcatacaagggcatcataggttctactatctatgtttttgcaagcttactca 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctatagcatacaggggcatcataggttctactatctatgtttttgcaagcttactca 440

                                                         
Query: 241 gtgatattcttaccatcacagattaaataatgatgcatttctcagg 286
           |||||| ||  |||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgatagtcacaccatcacagattaaataatgatgcatttctcagg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)