CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCCAATCAAAATGATGTTGACAGCATTGAGTAGATGCACTAAAA
GCTTGTACATCTATTGCTGAATTATTGGGATGGCTATCTTTAGTCCATCA
CATTCATTTTTCTCCTATTACCTGAAAGATAATTAGAGAATATTTTTTTC
TGACCCCAAGTCTACTCTAACTCAATATCTTTATGAGAATTAAATTCAAC
AAAAATTTGTCTATTAGTGAATGCAACACTCTTATATGTTAATATATTTT
ATAATATAAGCAATATAGATTTGTGTTATTTTAATGAATTTCCTATTCAA
AGATCATGACGTGTTTTTATTCCGACCCCACCCCCCGATGCAATGAGATT
ATAGTGGAGGTACTTTTGAGTGGCGCTCTGAGATAAAGAGTGGTTCTGGT
GGGGAAGTAAGAATCTGGTAAAGACTACAGCTCCATAAAAGAATTCCAAG
ATAGGAAGACAATTTGGCTCTGAAATCTACTTGATTGTCTACTGAGAATA
TTAGTTATCTCTCCTGCAGGTGCAATAATGATATACTCGGAAAGAGAAAT
TTAAGAAAATGTTGGGAACCGCGCCCACATTCGCCGGTACAAGATGGCGC
TGACAGCTGTGTTCTAAGCGGTAAAACAAAAATCTGCCCATGTGCTTAGT
GCGGTTCTCCACTCCA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAAACTATACCCTGACACAATAGCA
TCACAGGTCTGTTTATATTTCATAAACTGGGTTATAGCACTTTTAAAACT
CACTTAATCCAAGTAAATAGCATATTTGTCAATAATGGTAATTTCTATAA
TCCTGGCAAATCTGCAAGATGAAACTATTCTTAATACATTTGATAATTTT
ATAAGTTATAATATGAGAGGTATTTTTAGAAAAATATAATTTGATAATGA
CATTTTAAAATATGATTTGTGAAATCTTTTATTTCTATTTCTGACTTTTA
GGAGATTATTTCTTTTTTTTACTGCCCCCCCCCCCCTCATGATATTGTGT
TTAGGATAAAGTGTTGTTAAAGGTCAATGTCAAGATTTTCTATAAGCCGG
GCATTCTACCCTAAAAGTAAGCTGCTTCCCTAATTGGATGTGTATTTAAT
ATATCACTGTATCACATTAGAATCTCATATATCACTAATAGTTTGAAAGG
AAGAATTACATTGGTTTAACAAGGATTTACCGTACAACAAAAATATCTCA
TAGGCCAACAAGACTTTGCTGATAGGACCCTGAAATAGCTGTCTCCTGTG
AGGCTATGTCAGTGCCTGACAAATACCTAAGCGGATGTTAACCGTCCTCC
ATTGTATGGACATCA

Query= MSMg01no068_e17.b1 MSMg01no068_e17.b1 CHROMAT_FILE:
MSMg01no068_e17.b1 PHD_FILE: MSMg01no068_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:41 2005
         (318 letters)



>mm_chr5_57286737_57287454
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatcccaatcaaaatgatgttgacagcattgagtagatgcactaaaagcttgta 63
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaattcatcctaatcaaaatgatgttgacagcattgagtagatgcactaaaagcttgta 385

                                                                       
Query: 64  catctattgctgaattattgggatggctatctttagtccatcacattcatttttctccta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catctattgctgaattattgggatggctatctttagtccatcacattcatttttctccta 325

                                                                       
Query: 124 ttacctgaaagataattagagaatatttttttctgaccccaagtctactctaactcaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttacctgaaagataattagagaatatttttttctgaccccaagtctactctaactcaata 265

                                                                       
Query: 184 tctttatgagaattaaattcaacaaaaatttgtctattagtgaatgcaacactcttatat 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 tctttatgagaattaaattcaacaaaaatttgtctattagtgaatgtaacactcttatat 205

                                                                       
Query: 244 gttaatatattttataatataagcaatatagatttgtgttattttaatgaatttcctatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gttaatatattttataatataagcaatatagatttgtgttattttaatgaatttcctatt 145

                          
Query: 304 caaagatcatgacgt 318
           |||||||||||||||
Sbjct: 144 caaagatcatgacgt 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no068_e17.g1 MSMg01no068_e17.g1 CHROMAT_FILE:
MSMg01no068_e17.g1 PHD_FILE: MSMg01no068_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:41 2005
         (290 letters)



>mm_chr5_57181738_57182427
          Length = 690

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaactataccctgacacaatagcatcacaggtctgtttatatttcataaactgggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaactataccctgacacaatagcatcacaggtctgtttatatttcataaactgggtta 260

                                                                       
Query: 61  tagcacttttaaaactcacttaatccaagtaaatagcatatttgtcaataatggtaattt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcacttttaaagctcacttaatccaagtaaatagcatatttgtcaataatggtaattt 320

                                                                       
Query: 121 ctataatcctggcaaatctgcaagatgaaactattcttaatacatttgataattttataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctataatcctggcaaatctgcaagatgaaactattcttaatacatttgataattttataa 380

                                                                       
Query: 181 gttataatatgagaggtatttttagaaaaatataatttgataatgacattttaaaatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttataatatgagaggtatttttagaaaaatataatttgataatgacattttaaaatatg 440

                                                           
Query: 241 atttgtgaaatcttttatttctatttctgacttttaggagattatttc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgtgaaatcttttatttctatttctgacttttaggagattatttc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)