BAC Information

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BAC

Clone NameMSMg01-068E23
Chromosome5 (Build37)
Map Location 86,318,198 - 86,467,394
singlet/doubletdoublet
Overlap geneCenpc1
Upstream genenone
Downstream geneLOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068E23.T7 (MSMg01no068_e23.b1)MSMg01-068E23.TJ (MSMg01no068_e23.g1)
ACCAG292834AG292835
length718849
length of high quality
(start - end)
321 (46 - 366)190 (58 - 247)
definitionCHROMAT_FILE: MSMg01no068_e23.b1 PHD_FILE: MSMg01no068_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:42 2005CHROMAT_FILE: MSMg01no068_e23.g1 PHD_FILE: MSMg01no068_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,467,077 - 86,467,394)(86,318,198 - 86,318,387)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTAGATATGAAAAAAAAACAAGAAACCATTCAAGATCAGTTGT
ATTATTATTCTCAAAGTATTAAGTATGGTGGTTTATTATATTTAATCTTG
TTGCACTTTAGAAATGAAAATACAGATATCTGTCCAAATAATTTATTCAA
ACATATATAGCTATGACATGCATTTTCTATTTTAAGTAAATACATTTTGG
TTATAATTCTACAGCTATGAATTTCAAGGTTTTAGTATATATATTTAATG
AAGGGCATTAAAGTAGATACCCAGCTTTAAATTCCTATGATCTTATTATT
ATAAAATGGAGGGAATATTATTGAAACACCCCACCCCCAATGTGAACTGC
TTTTTTTAAACAGATAGAGATGTTATTCCCTGTATAAAATGTTTATTCAG
TAAACAAAGATGAAGCTTCCGTCTCTCTAAAGTGTTGCAGTAATGTTTTG
TTTTAGTTCTGTGGTCAGGCACACAGCAGCAGTTCCATTTTCTCCGCCTC
CTCCAAGTGACATGAAATTATTAGAAGATGAATTTATTATTGATCGGTCA
TATAGAAGTTTTTCAAGTCGACTTTGTTTGATGATACCAAGCAAAGATAG
GCATCTGAGCGCCCACAAGCCATCTCCTGAAAACACTGCACTGCTTTCTG
GTAAGAAGTCAAGAGAGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGCAGAGAAAAACAAACTTTATTTAACCTTCTGTTTCCCTAA
CTTGATCACAAATCAACTGTAATCAAGTGTAAGCAAATCAAATGTAAACA
TTGCCTATTAATATTCTATAAAGTACCTTGGAAGGGGTGCTCTTACTAAT
GTGAGACACTAAACAAGGACATCTGTAATCAATACACAGTACAGTAGTCT
CAACTATGGGCCACAAAGTACAATAAAATGTAAAACAAATCAATCCATAT
AGCAATAATTTTTCTTTGTGAAATTTGCACATAAAACTGGGCGGAAATAT
TTTGTTATTTATCCCCCAACTACCCCCCTTTTTTGTGAAAAAAATAACCT
GGCTAACAACCATTTTTCCCTCCCTAAAAAAAAAAAAAAAAAAAATTCCC
AGGGGGGGGGGGGCGCCCATTAATTTCTTCACTTCTGCAAATAATCCTAT
TTTACCTTTAAAATTCGTTTAATTTGGGGCGTACCCTTTTTTCTTCTCTC
AAATTATTACCGGGGGGTAAATAATTTTTTTTCCCTCATAACACAACTTC
CCTGATCGAGTTTATTTTGGATAATAATATTTCTTGTGTTCCGCTCTTAA
GCGCCCTTTTTACACCCCCTTTCAGTATTAAAATATCCACATTTCTTTAT
TCCCCCTATTATAATTTATACATATGTTTAAACATCACTATGTGGCGCTC
TTTTCTTTCTATTTCTTTCTCCTTTCTCTTTATATTTATTCACCTTTCGC
CACATTTGTGTATACACTATCCGCGCGCATTCTCTCTTTCTGCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_e23.b1 MSMg01no068_e23.b1 CHROMAT_FILE:
MSMg01no068_e23.b1 PHD_FILE: MSMg01no068_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:42 2005
         (321 letters)



>mm_chr5_86466874_86467594
          Length = 721

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgttagatatgaaaaaaaaacaagaaaccattcaagatcagttgtattattat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggaattctgttagatatgaaaaaaaaacaagaaaccattcaagatcagttgtattattat 462

                                                                       
Query: 64  tctcaaagtattaagtatggtggtttattatatttaatcttgttgcactttagaaatgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tctcaaagtattaagtatggtggtttattatatttaatcttgttgcactttagaaatgaa 402

                                                                       
Query: 124 aatacagatatctgtccaaataatttattcaaacatatatagctatgacatgcattttct 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 401 aatacagatatctgtccaaataatttaatcaaacatatatagctatgacatgcattttct 342

                                                                       
Query: 184 attttaagtaaatacattttggttataattctacagctatgaatttcaaggttttagtat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 attttaagtaaatacattttggttataattctacagctatgaatttcaaggttttagtat 282

                                                                       
Query: 244 atatatttaatgaagggcattaaagtagatacccagctttaaattcctatgatcttatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atatatttaatgaagggcattaaagtagatacccagctttaaattcctatgatcttatta 222

                             
Query: 304 ttataaaatggagggaat 321
           ||||||||||||||||||
Sbjct: 221 ttataaaatggagggaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_e23.g1 MSMg01no068_e23.g1 CHROMAT_FILE:
MSMg01no068_e23.g1 PHD_FILE: MSMg01no068_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:42 2005
         (190 letters)



>mm_chr5_86317998_86318587
          Length = 590

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcagagaaaaacaaactttatttaaccttctgtttccctaacttgatcacaaatcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcagagaaaaacaaactttatttaaccttctgtttccctaacttgatcacaaatcaac 260

                                                                       
Query: 61  tgtaatcaagtgtaagcaaatcaaatgtaaacattgcctattaatattctataaagtacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaatcaagtgtaagcaaatcaaatgtaaacattgcctattaatattctataaagtacc 320

                                                                       
Query: 121 ttggaaggggtgctcttactaatgtgagacactaaacaaggacatctgtaatcaatacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggaaggggtgctcttactaatgtgagacactaaacaaggacatctgtaatcaatacac 380

                     
Query: 181 agtacagtag 190
           ||||||||||
Sbjct: 381 agtacagtag 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)