Query= MSMg01no068_h01.b1 MSMg01no068_h01.b1 CHROMAT_FILE:
MSMg01no068_h01.b1 PHD_FILE: MSMg01no068_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:52 2005
(638 letters)
>mm_chr5_134033987_134035021
Length = 1035
Score = 1062 bits (549), Expect = 0.0
Identities = 609/631 (96%), Gaps = 6/631 (0%)
Strand = Plus / Minus
Query: 4 gaattcaacttgtcttaccttgtaattttacagatgaggaaaaccaagggccatagaaat 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattcaacttgtctaaacttgtaattttacagatgaggaaaaccaagggccatagaaat 568
Query: 64 ttaaatgggtgtcttctgatttgagtagctgatttgagtgagctggcatacagagctgtt 123
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttaaatgggggtcttctgatttgagtagctgatttgagtgagctggcatacagagctgtt 508
Query: 124 aatgaataatttccagttcaggttggggaaagaactcagcaggaaaagttgttgttgctc 183
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 507 aatgaataatttccagttcaggttagggaaagaactcagcaggaaaa---gttgttgctc 451
Query: 184 aagatggaggtatcttagtttgattcccttaacccaggtaaaaggcagattcagcgatgt 243
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 450 aagatggagggatcttagtttgattcccttaacccaggtaaaaggcagactcagcgatgt 391
Query: 244 gatgcatgtctatgatcctagcactgctgtagcaagatggggaaacagtggtagcagaaa 303
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 390 aatgcatgtctatgatcctagcattgctatagcaagatggggaaacagtggtagcagaaa 331
Query: 304 tctagagcctgtggattggctagcccgacaaagctagcaatgaatcaagactgccttgaa 363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tccagagcctgtggattggctagcccgacaaagctagcaatgaatcaagactgccttgaa 271
Query: 364 gaaggacaaggagaggattaacacttgatgtcatcctctgattttcacatgtgcaccatg 423
|| |||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 270 gagggacaaggagaggattaatacttgatgtcatcctctgattttcatatgggcaccatg 211
Query: 424 gcacacatgtgcctgcagtcacatgcactaacacatacacatgtacacatacacacacac 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 210 gcacacatgtgcctgcagtcacatgcactaacacatacacatgtacacatgcacacacac 151
Query: 484 aaaattcaccctcagactgcagaagaggagtctcacagaagtctcctcagagtactacgg 543
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 150 aa--ttcaccctcagactgcagaagaggaatctcacagaagtctcctcagagtactacgg 93
Query: 544 gacacgcagcagcagtagggtggctaccaaagtggcacatagtaggccttcatgttccat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 gacacgcagcagcagtagggtggctaccaaagtggcacatagtaggccttcatgttccat 33
Query: 604 ctgtgcaaacactgacaggagttttgcattt 634
|||||||||||||||||||||||| ||||||
Sbjct: 32 ctgtgcaaacactgacaggagttt-gcattt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1035
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1025
Effective search space: 643700
Effective search space used: 643700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_h01.g1 MSMg01no068_h01.g1 CHROMAT_FILE:
MSMg01no068_h01.g1 PHD_FILE: MSMg01no068_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:52 2005
(578 letters)
>mm_chr5_133964076_133965053
Length = 978
Score = 1087 bits (562), Expect = 0.0
Identities = 574/578 (99%)
Strand = Plus / Plus
Query: 1 acctttccagtaggatgaataatgctcacctcatgtttgagggaaggtctgaaaaacata 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 acctttccagtaggatgaataatgctcacctcatgtttgagggaagatctgaaaaacata 260
Query: 61 ggtcagaggtagggaggggactggggagatggctaagtggttggagggctttccacagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcagaggtagggaggggactggggagatggctaagtggttggagggctttccacagaa 320
Query: 121 gcatgacagcctgagtatgattacccagaagccctgtaaagttaggtgtaggagtgtgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgacagcctgagtatgattacccagaagccctgtaaagttaggtgtaggagtgtgat 380
Query: 181 gcagagcttgcacagtgagctgcagggaatgaagaagaacccctggaagttcctggctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagagcttgcacagtgagctgcagggaatgaagaagaacccctggaagttcctggctag 440
Query: 241 ctagcctggtgtatgtacatagcttcaaagaacagaagtcaagaactggatcaacaaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagcctggtgtatgtacatagcttcaaagaacagaagtcaagaactggatcaacaaggt 500
Query: 301 ggaagatgaggacctactccagaggctgtcttctgacctccctgggccccttgggaagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagatgaggacctactccagaggctgtcttctgacctccctgggccccttgggaagag 560
Query: 361 atgttctgctctgtaaaaggccccctggtcaccatcttcctccagtaaagcacatctccc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 atgttctgctctgtaaaaggccccctggtcaccatcttcctccagtaaagcacatctctc 620
Query: 421 aagggtttcgtggccactgataatgtcagcaattaggatctaagcaataccaaccatgtt 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagggttttgtggccactgataatgtcagcaattaggatctaagcaataccaaccatgtt 680
Query: 481 ctaatatagtaaatcaagcaatagacaactcccctgcctgatattagtaaaacctcacgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaatatagtaaatcaagcaatagacaactcccctgcctgatattagtaaaacctcacgt 740
Query: 541 ccatgtggatagttagttccccaggaaaaactcttagt 578
||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 ccatggggatagttagttccccaggaaaaactcttagt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
