BAC Information

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BAC

Clone NameMSMg01-068K03
Chromosome5 (Build37)
Map Location 132,411,254 - 132,411,527
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068K03.T7 (MSMg01no068_k03.b1)MSMg01-068K03.TJ (MSMg01no068_k03.g1)
ACCAG293081AG293082
length710905
length of high quality
(start - end)
278 (44 - 321)77 (203 - 279)
definitionCHROMAT_FILE: MSMg01no068_k03.b1 PHD_FILE: MSMg01no068_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:07 2005CHROMAT_FILE: MSMg01no068_k03.g1 PHD_FILE: MSMg01no068_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCCTCCTGCCTCAGCTCTCAGTTGCTGCATGGTACTACCTTGC
TTTGTTCTGATTTCTCTCCTTTTGTAGGAATTTACAACTCAAATATTTGT
ATATTTAGAACTCAAATAATATGGTGTCCCCTTTAAAAAGATTCTTCCTG
TTGTCAGGATAGATTTATAAATTCATATCTTTCTCCAACAGTCTTGACTT
CATTACTTTGCTTAATAATGTTACTGTTCATATTATCACAGATATGGTCA
CTGTTAAGGATATGTAAGCGGGCTTTTGTGTCCTTGGGGTGCATTCCTTT
CATTATTTTGATTACTTCTTTCCCCCCCACCACCGCCATTTTGTATCCAG
CGTGAGTTAGCCCTGGAGTATAAAAGAAAAAAAATATCTTCCTATTTGAG
GGTGTTGAGTCTTTTTAAGATTCCTTTTCTTTTTGAAACATTAGCTCTAC
TCACCATGTCTGAATCATGAGCTTGGTGTCTTAATCTTTCACCCTTCTGA
GTGCTTACTTGTTTGCTGACTTTGTTTTTAAACCACTAATTGTCCTCTTT
TTCCTTGATTTGTGCTTTAATTACCCTTTTGATTCGCCAGTCCGAATAAA
GAATAAGTCTGTTTAATCTGTCCTCCCATTCTTTGATTAATATTATTGTT
TGGAAGGGCC
CCCCTCCTCCCCCCCNCCTCCCCCCTTTCCCCTCCCCCACANCTNNNAAG
ATATTTNNNNAAAAGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAAAACTAA
GGGAACAAACAGCTTGGCTGAAGAAATACAAATATTCCTTGAGACAAACA
TCTATGAACACTCCAAAGTGGTTCCGGATGATCCCGTTCCTACTGGACCC
CCAAAGAGATGGTTTTACTTCCTTTTACTGAAAAAAAAGAACCGTCAATT
CTGGTCCGCCTTGCAGTTTGTCTTATTCATAACTGGCATCTCAAATTCAC
AATGTACGGAACAAGAGTCTTCATTGTAGGAGAGCTTTATTTTTTTTTCC
CCCCAGATACAAAATACCATCGGCCAAATTTTAATAATCTCCGGAGCAAG
ACCCCCACGATGTTGTTTTAGATATTAAATACCCGTCCTTTTCTGCCCAC
AAAAAAAAAAAAAAAAAAAAACCGTGGGGGGGGGGGGGCCGGATGAACAC
TTACTAACTCCCCCATTTTCTCCTTTTTCCTTACGTATTGACCCGACCTG
TTATTATCCTATTTTACTGTACTTAATAAAATTACCGCAGAATGTCTCTC
ACGCAAAAAGAATACATACTTTACATTTTTTTTCCCAATTTCCCCTCGTT
ATACCGCCCCCGTTCCATATTACCGGTATTGCTCTAAGGGGACACAACCC
CATCTTTATATCGCCACCGTTCAGTTTTTTGTTTATCGTTCGCGAAAACT
ACGCATAGTCGTTTATCTAGCAATCACTTTCTACACAACGTCGCTTATCA
CGGGCCTATTTTGATTTATCTATTCGCCCGGGCTTACTAGCCTTACTCCA
CTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_k03.b1 MSMg01no068_k03.b1 CHROMAT_FILE:
MSMg01no068_k03.b1 PHD_FILE: MSMg01no068_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:07 2005
         (278 letters)



>mm_chr5_132411050_132411727
          Length = 678

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgatcctcctgcctcagctctcagttgctgcatggtactaccttgctttgttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcctgatcctcctgcctcagctctcagttgctgcatggtactaccttgctttgttc 419

                                                                       
Query: 65  tgatttctctccttttgtaggaatttacaactcaaatatttgtatatttagaactcaaat 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 418 tgatttctctccttttgtaggaatttacaactcaaatgtttgtatatttagaactcaaat 359

                                                                       
Query: 125 aatatggtgtcccctttaaaaagattcttcctgttgtcaggatagatttataaattcata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 358 aatatggtgtcccctttaaaaagattcttcctgttgtcaggatagatttatgaattcata 299

                                                                       
Query: 185 tctttctccaacagtcttgacttcattactttgcttaataatgttactgttcatattatc 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 298 tctttctccaacagtcttgacttcattactgtgcttaataatgttactgttcatattatc 239

                                             
Query: 245 acagatatggtcactgttaaggatatgtaagcgg 278
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 acagatatggtcactgttaaggatatgtaagcgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)