BAC Information

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BAC

Clone NameMSMg01-068P15
Chromosome5 (Build37)
Map Location 83,573,176 - 83,573,724
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P15.T7 (MSMg01no068_p15.b1)MSMg01-068P15.TJ (MSMg01no068_p15.g1)
ACCAG293345AG293346
length707716
length of high quality
(start - end)
577 (37 - 613)549 (74 - 622)
definitionCHROMAT_FILE: MSMg01no068_p15.b1 PHD_FILE: MSMg01no068_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:35 2005CHROMAT_FILE: MSMg01no068_p15.g1 PHD_FILE: MSMg01no068_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGGGCCGCTATACGACTCCTATAGGTCCCAAATCCGCGGAATTCTCACC
TGAGTTTCCCGAATGGCAGAGAAGCATCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTACACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTTGCAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCTTCAGTAAATTGGAC
ATAGTAATACTGGAGGATCCCACAACCTCTCCTAGGCATATATCCAGACG
ATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAAAAACTGTGGTATATTTACACAATGGAGTACTACTCAG
CTATTAAAAAGAACGAATTTATGAAATTCCTAGGCAAATGGTTGGAATTG
GAGGGCATCATCCTGAGTGACGTAACCCAATCACAAAAGAACTCACATGA
TATGTACTCACTGACAAGTAGATATTAGTACAGAAACTCAGAATACCCAA
GATACTAGATACAATCTGCTAAACACTTGATACACAAGAATAACGAAGAC
CAAAATG
CAATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTATCTTTATTTCACACTGTAGTGTA
TTTTTGTATACTGGGATGAACTCAGTAATTATTATTTTATTAAGTTTCCT
GATACTGTCCTGAAGCTAGTACAGGAAATGTGGTGAAATATAAATGATAT
TTTCTATGATCCTCTTAAGCTAAAAAGCATTTCAATGAATGTTTTATAGA
AAATTCTGGTACCAAGGTTTTCTCAGAACAAAGCTAATTTGAATTTAGAT
TATATATTTTTACATTGTTTCTTCTCCCCAAATTCTGTGTTCCAGGAATT
CATTTATAAATGCACAGAATATTTTATCAGAAATGTTATCTTCTTCTTTC
ACAAATATGTAAGTTTACCTTCCCTAACTGATTCACAGCCCACTCTGAAT
TCTATTCTTCTCTCCACAAGAGAACACTCCTGGGTTTTCAGGAAACAAAC
AATCATACTCACCCTAGTTTGTTGTACAGAAACAAAGGAACCCTACTTTC
CAATCCAATGTACATTCTCTCTTGTATTCTGAATTCTGAATCTATGTTAA
AAATGGGTTTCAGAGGGGAAACCAGGAAAGGGAATAACATTAGAAATGTA
AAATAGAAAATATCTAATAAAAAAAGAGAATACTCTGAGTTACCAAGGCA
TCAGTCTCCCCTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p15.g1 MSMg01no068_p15.g1 CHROMAT_FILE:
MSMg01no068_p15.g1 PHD_FILE: MSMg01no068_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:35 2005
         (549 letters)



>mm_chr5_83572976_83573924
          Length = 949

 Score = 1054 bits (545), Expect = 0.0
 Identities = 548/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatctttatttcacactgtagtgtatttttgtatactgggatgaactcagtaattatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 actatctttatttcacactgtagtgtatttttgtatactgggatgaactcagtaattatt 690

                                                                       
Query: 61  attttattaagtttcctgatactgtcctgaagctagtacaggaaatgtggtgaaatataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 attttattaagtttcctgatactgtcctgaagctagtacaggaaatgtggtgaaatataa 630

                                                                       
Query: 121 atgatattttctatgatcctcttaagctaaaaagcatttcaatgaatgttttatagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgatattttctatgatcctcttaagctaaaaagcatttcaatgaatgttttatagaaaa 570

                                                                       
Query: 181 ttctggtaccaaggttttctcagaacaaagctaatttgaatttagattatatatttttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttctggtaccaaggttttctcagaacaaagctaatttgaatttagattatatatttttac 510

                                                                       
Query: 241 attgtttcttctccccaaattctgtgttccaggaattcatttataaatgcacagaatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 attgtttcttctccccaaattctgtgttccaggaattcatttataaatgcacagaatatt 450

                                                                       
Query: 301 ttatcagaaatgttatcttcttctttcacaaatatgtaagtttaccttccctaactgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttatcagaaatgttatcttcttctttcacaaatatgtaagtttaccttccctaactgatt 390

                                                                       
Query: 361 cacagcccactctgaattctattcttctctccacaagagaacactcctgggttttcagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cacagcccactctgaattctattcttctctccacaagagaacactcctgggttttcagga 330

                                                                       
Query: 421 aacaaacaatcatactcaccctagtttgttgtacagaaacaaaggaaccctactttccaa 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacaaacaatcatactcacactagtttgttgtacagaaacaaaggaaccctactttccaa 270

                                                                       
Query: 481 tccaatgtacattctctcttgtattctgaattctgaatctatgttaaaaatgggtttcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccaatgtacattctctcttgtattctgaattctgaatctatgttaaaaatgggtttcag 210

                    
Query: 541 aggggaaac 549
           |||||||||
Sbjct: 209 aggggaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)