BAC Information

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BAC

Clone NameMSMg01-068P18
Chromosome5 (Build37)
Map Location 48,577,602 - 48,577,921
singlet/doubletsinglet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P18.T7 (MSMg01no068_p18.b1)MSMg01-068P18.TJ (MSMg01no068_p18.g1)
ACCAG293351AG293352
length727726
length of high quality
(start - end)
324 (45 - 368)295 (75 - 369)
definitionCHROMAT_FILE: MSMg01no068_p18.b1 PHD_FILE: MSMg01no068_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:36 2005CHROMAT_FILE: MSMg01no068_p18.g1 PHD_FILE: MSMg01no068_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTATATCATCTCTACCATTAAATTAGTTGTTTGCTTAAGTGCAGT
CATGAGTTTTTGATGCTAATATAAAATGATCATTTTCTTCCCATATCTAA
CTAAAATTTTTAACTTTTTTCTATTCTACAGCACTCTGAACAATAACAAT
ATTACTAGACTTTCAGTGGCAAGTTTCAACCATATGCCTAAACTTAGGAC
ATTGTAAGTAGTCAACATGTACAGAAAGATGGTTTAATTAATTATGGCTG
TTTCTTCAGTACAACTTTTATTGAGTAGACTATAGGACCACTAGTTCATT
ATTGCACAGGCAAGGAAAGTTTTTTCTTGACCACCCCCCCAAAATGCTAT
TTTAGCAAATGCACTATTACTCTGAAAACTTGAAGACTTCCTCATAAATA
ATATGCATTGCATAAAGTTTGGAGGAAAATAAAACATTTACTTTGAGCTA
TTGTAGAGGTCACATTTCATTAAGAAGTGGAAGACTCCCTGATTGGCTGT
CAGAATTGATAAATGGGAAATCTTTATGATTTTATTACTGTATTAGAAGC
AGACCTAATACAGCTAAATTGTGCTCCAGTGTTCTCTGTAATGTAAAGTC
GGGGCATCACCCACTGCTGCTTGCATAATTAAAGCTGCGTCAGCATTTAT
ATTTAAAAATATCTTCCCAGGGTTACG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGTTCGAGGCCAGCCTGGTCTACAA
AGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACCCTGTCTCAAATA
AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAATAAATAAATAAATATAAATAAATAAAAATTAGAAAGGAAACGATGCT
GAGCAAACCAGTAAGGAGCACTTCTCCCTGGTCTCTGCATCAGCTCTTAC
CTCAAGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAA
CCCTGTCTCAAATAAATAAATATTTAACCCCCCCCCCACCTAAATAAATA
AATAAACAAACAAACAAACAAACAAATAAACAAACAAACAAATAAATAAA
CGGACGAGTAAGTAAATAAAAATTAGAAAGGAAATGATGCTGAGCAAACC
AGTAAGGAGCACTTATCCCTGGTCTCTGCATCAGCTCTTACCTCAAGGTC
CTGACCTTAAATTTGTGTCCCGACTTCCACCAGCAATGGACTGTGATGTA
GAAGTGCAAGTAAAACAAACCCTTTCTGCCCTCACAGGGCGAGCAATAGA
AAACCTACGGCAATGCCTTTTTAATGGTTGGGATATGTGATGCTAGCTCC
CTTACCCAAGTGCTGTTAACTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p18.b1 MSMg01no068_p18.b1 CHROMAT_FILE:
MSMg01no068_p18.b1 PHD_FILE: MSMg01no068_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:36 2005
         (324 letters)



>mm_chr5_48577398_48578121
          Length = 724

 Score =  598 bits (309), Expect = e-175
 Identities = 318/321 (99%), Gaps = 2/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctatatcatctctaccattaaattagttgtttgcttaagtgcagtcatgagtt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatatcgtctctaccattaaattagttgtttgcttaagtgcagtcatgagtt 264

                                                                       
Query: 65  tttgatgctaatataaaatgatcattttcttcccatatctaactaaaatttttaactttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgatgctaatataaaatgatcattttcttcccatatctaactaaaatttttaactttt 324

                                                                       
Query: 125 ttctattctacagcactctgaacaataacaatattactagactttcagtggcaagtttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctattctacagcactctgaacaataacaatattactagactttcagtggcaagtttca 384

                                                                       
Query: 185 accatatgcctaaacttaggacattgtaagtagtcaacatgtacagaaagatggtttaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accatatgcctaaacttaggacattgtaagtagtcaacatgtacagaaagatggtttaat 444

                                                                       
Query: 245 taattatggctgtttcttcagtacaacttttattgagtagac-tataggaccactagttc 303
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 445 taattatggctgtttcttcagtacaacttttattgagtagacct-taggaccactagttc 503

                                
Query: 304 attattgcacaggcaaggaaa 324
           |||||||||||||||||||||
Sbjct: 504 attattgcacaggcaaggaaa 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)