BAC Information

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BAC

Clone NameMSMg01-069G24
Chromosome5 (Build37)
Map Location 52,763,219 - 52,763,413
singlet/doubletsinglet
Overlap genenone
Upstream genePpargc1a, Dhx15, Sod3
Downstream geneGm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069G24.T7 (MSMg01no069_g24.b1)MSMg01-069G24.TJ (MSMg01no069_g24.g1)
ACCAG293695AG293696
length709691
length of high quality
(start - end)
195 (125 - 319)136 (49 - 184)
definitionCHROMAT_FILE: MSMg01no069_g24.b1 PHD_FILE: MSMg01no069_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:11 2005CHROMAT_FILE: MSMg01no069_g24.g1 PHD_FILE: MSMg01no069_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGATCCCATTATCCCAGAGAAATCTTGGTCCTTGTGACAGCCTTCCTA
TAACACAAGTCTTCGGTAGTTACCAGATCTAGACTAGCCAAGACAACTCC
AAAGTTAGTGAAAGACCGTGCTTCGATATGTAAAAATGGAGAGGGGTCAA
ACAAGTCACCTGCCAACGAACTTGGGTCCATGTGTACATGCACGCACACA
CTTGCTTGATAACATACATGAGATCATGACGGAGTGTGCCCATGTAACAC
ACAAAACATACCACACACACTCTGAGACACTCATACAAAAGAATAAAGAG
ATGCAGGAAGATTTTGTTGATGCCTACAACCCACAAAAAGGAACATAGGG
CTGGCTCTATTATTCAGTGCATAAAGTTGATTGCTGTATTAAGCCAGCAA
CTTGAGTTCAGCGCCCAGAACCCGTGCAATGGTGTCTATAAGTTCTTCTC
TGATCTCCACACGTTGCACCATGGCAACTACATGTTCCCATCCCACTTCC
CACATTATTCTTATACTCATAACGATTTTTTTTCACAGTTACCTTCTTTG
ACTAGGGCATTATCAGTCTATATTATCTATGTTACCTCTCCCCCAATCTT
CCCAAAGGTTAACTCTTCTTCTAGCCGTTACCTCCTTTCTACGCTTTCTC
ACTCTTTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CTCTGTCACCTTTGAGGTTCCATGCTAAAGGAGTCCATGCTGTACTGCCC
CCGGGACCTGCAGTGCATTTTCTTAATTAGTTATTGGTGGGGAGGGCCCA
GCCCATTGGAGGTGGTGCCACCCCTGGGCAGGTGGCTCTAGAGTGCTATA
AGACAGCAGACTGATCAGGCCATGAGGAGCACGCTGTGTTGTTTGTACTT
CTTAAGAGCTTGTCTTGTGTCAGGACCCATCTAGGATAGGCTAAAGTTGC
TTTGTGGGGCTCCTGAAAGACGGCCCACCATTTTTGATTGGGTGNTTTCC
CCCCCCCCTCCCTGGCAAGTTCCCAAAGAGACTTGATCCCATGATTGTGC
CTAAAAAAAAATAAAAACATTCCTGTGGGTGGTAGATTACCACAATAACT
CCCTGGGCCTCATACCATCCTATTGACCTGAATTCCTGCCGATCATCCTA
AACCTGATCTATGATCCATTGTTCGTTCCCATATATGCATCCTGTGCTCT
CCTCCATTCTTATTCTTCGTCTTTCTCACTGTTCGATAATACGTCCTCCC
TCTGTGTATAATTACCCTGTCCCTACCTCCTTCCCCCTATCCCATTCTCT
CTAGTTGACGTCCGTGTCTTCCCTTCTTCAGTTTACTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_g24.b1 MSMg01no069_g24.b1 CHROMAT_FILE:
MSMg01no069_g24.b1 PHD_FILE: MSMg01no069_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:11 2005
         (195 letters)



>mm_chr5_52763019_52763613
          Length = 595

 Score =  362 bits (187), Expect = e-104
 Identities = 193/195 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctagactagccaagacaactccaaagttagtgaaagaccgtgcttcgatatgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agatctagactagccaagacaactccaaagttagtgaaagaccgtgcttcgatatgtaaa 336

                                                                       
Query: 61  aatggagaggggtcaaacaagtcacctgccaacgaacttgggtccatgtgtacatgcacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aatggagaggggtcaaacaagtcacctgccaacgaacttgggtccatgtgtacatgcacg 276

                                                                       
Query: 121 cacacacttgcttgataacatacatgagatcatgacggagtgtgcccatgtaacacacaa 180
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cacacacttgcttgaaaacaaacatgagatcatgacggagtgtgcccatgtaacacacaa 216

                          
Query: 181 aacataccacacaca 195
           |||||||||||||||
Sbjct: 215 aacataccacacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)