BAC Information

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BAC

Clone NameMSMg01-069K03
Chromosome5 (Build37)
Map Location 111,268,148 - 111,418,085
singlet/doubletdoublet
Overlap geneHscb, Chek2, Ttc28
Upstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069K03.T7 (MSMg01no069_k03.b1)MSMg01-069K03.TJ (MSMg01no069_k03.g1)
ACCAG293844AG293845
length686698
length of high quality
(start - end)		189 (108 - 296)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no069_k03.b1 PHD_FILE: MSMg01no069_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:26 2005CHROMAT_FILE: MSMg01no069_k03.g1 PHD_FILE: MSMg01no069_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,417,897 - 111,418,085)(111,268,148 - 111,268,390)
sequence
CGCTATACACTCCTATTTTCCGAGATCCGCGGATTCCAGGGATTAGCTGG
GTACAGAAATCCTCACACATGGATGGTGGAGATGTGGACTGGAAGGCATT
CCGCCGGAATCAATACAGAGACACCCCAAAATAACTAAAAGTAGGGCCTG
GAGAGATGGTTCCGTGGCTAAGAGAGCCAGTAGGGCCTGGTGCTCTTCCC
ACGCGGCAGCTCACAGTGTCCATAACTCTAGTTCTAGGGAATCCTACATC
ATGATCTGCAGAAGACACCGGGTGAGGGGCACATGTACATACAAGCAAGA
TTCATCCAAGCACATAAGCACATTTTGAAAAACTAAAATTATATTACCTA
CCCGACCCGCTCAGTGATTAAAGGCATTTGTAACTGTCCCTGATGGCTTG
AGTTCAATGACCATGACCCACCTATTGGATGGAAGAATATAACCAACTCC
CACAAATTGTTCTCTGGCCTCTGTAGACACAAGGTTGATATATATTGAGA
GATAGAGAGAGAGATAGAGAGAGAGTGAGAGCTAGTTAGATACATCCATA
CTTTTATTTTTCCTCTCTCCTCTTTTTTTGCTATTAAATTCGTCTTTCCT
ATCCTATTTCCTTAACTCTACCTTCCACCTACCTGCTTTCCGTTTTCCCT
TTCCACTTCTTCCCCTTATTCTCCTATCCGTAGTTG

ATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGAACCTGTGTTTTCCACTTTACAAGTG
CTTAGATCACAGGCAGGCATCTGCAACTTCACTCCTGTTTAACCCCCGCC
TCCACCCTTATCTTCTCTCCAGTCTGTAACTTTATTTCCTCTCCGTCTCA
GGAAAACTCCTAAAATCTCACTAGGTACTACTTATACCTATGGCCTACAC
TTATCCATCTTTGTAGTTGTTTTGAATCAGTCTCGGCAAATTGCCTAAGA
TGGCTTTGAACTGTGGTCCTCAGCCTCAGACCCCCCCCAAGCTGGCTGGA
AATTATTGTCTCGCAGACGCGGCCCCAAGTCTAGATCGCTCGGTTTAGTA
AGTCCGATCCGCCTTCTCGTCATGACGCGCCGCCCGCACCAGTTCATGAG
GCTGAATCATTCTCGAGTGGGACCAGGAGGTTGCATATTGCGCCAGTGTG
TGCATAACATCTCATCCTCCAATTCGGCTTCCCTTGTTTGATCGCATTTT
CCAGTTCTGCGGTGCTATGCTCCTTTCTGCTTACGTTCTCGCTGCCCAAC
ATTCTCCTTCCCAGGATTTCTTGCCAGCGGCCCATCCCATTTATCATCTT
CGTTTCGCCTTTCCTTCTTCTCCCTCTTTCCCGCCTTTCCCGCTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_k03.b1 MSMg01no069_k03.b1 CHROMAT_FILE:
MSMg01no069_k03.b1 PHD_FILE: MSMg01no069_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:26 2005
         (189 letters)



>mm_chr5_111417697_111418285
          Length = 589

 Score =  342 bits (177), Expect = 6e-99
 Identities = 186/189 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcaatacagagacaccccaaaataactaaaagtagggcctggagagatggttccgtgg 60
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 389 aatcaatacagagacaccccaagataactaaaagtagagcctggagagatggttccgtgg 330

                                                                       
Query: 61  ctaagagagccagtagggcctggtgctcttcccacgcggcagctcacagtgtccataact 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 329 ctaagagagccagtagggcctggtgctcttcccacgcagcagctcacagtgtccataact 270

                                                                       
Query: 121 ctagttctagggaatcctacatcatgatctgcagaagacaccgggtgaggggcacatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctagttctagggaatcctacatcatgatctgcagaagacaccgggtgaggggcacatgta 210

                    
Query: 181 catacaagc 189
           |||||||||
Sbjct: 209 catacaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no069_k03.g1 MSMg01no069_k03.g1 CHROMAT_FILE:
MSMg01no069_k03.g1 PHD_FILE: MSMg01no069_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:27 2005
         (243 letters)



>mm_chr5_111267948_111268590
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaacctgtgttttccactttacaagtgcttagatcacaggcaggcatctgcaacttca 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ctgaacctgtgttttccactttacaagtgcttagatcacagacaggcatctgcaacttca 260

                                                                       
Query: 61  ctcctgtttaacccccgcctccacccttatcttctctccagtctgtaactttatttcctc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctgtttgacccccgcctccacccttatcttctctccagtctgtaactttatttcctc 320

                                                                       
Query: 121 tccgtctcaggaaaactcctaaaatctcactaggtactacttatacctatggcctacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccgtctcaggaaaactcctaaaatctcactaggtactacttatacctatggcctacact 380

                                                                       
Query: 181 tatccatctttgtagttgttttgaatcagtctcggcaaattgcctaagatggctttgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatccatctttgtagttgttttgaatcagtctcggcaaattgcctaagatggctttgaac 440

              
Query: 241 tgt 243
           |||
Sbjct: 441 tgt 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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