BAC Information

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BAC

Clone NameMSMg01-069K11
Chromosome5 (Build37)
Map Location 82,512,896 - 82,651,663
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069K11.T7 (MSMg01no069_k11.b1)MSMg01-069K11.TJ (MSMg01no069_k11.g1)
ACCAG293860AG293861
length681713
length of high quality
(start - end)
134 (103 - 236)189 (116 - 304)
definitionCHROMAT_FILE: MSMg01no069_k11.b1 PHD_FILE: MSMg01no069_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:28 2005CHROMAT_FILE: MSMg01no069_k11.g1 PHD_FILE: MSMg01no069_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,651,530 - 82,651,663)(82,512,896 - 82,513,084)
sequence
GCAATACACTCCTATTCGAGAGGACCGCGGAATTCTATGCTTGCAAGAAT
AGAGAAGATGCAGTTAGACACTGCTCACACACCCAAGTGAAGCTTGGCTT
GAAAATATATATCCAGGCACTGAAAACCTGACTCCTGAAAGGAACTCTTG
CTTTAACTATAGGGGAGGATGGCAACATTAATTTAAAAGGCCGGTACATG
CAAGAGTCTACACAACTCTCCATAGGAAAGAGAAAAAAGAAAGAAAATAA
AAACTTTGAGAAGCCAAGTAAGGCCATTTCTTTTTTTCAAGATTTACTTT
TAATTATGTATACTGTTCGTGTGAATAGATGCATGTATTTTTAGGTGCCC
GCCCCCGGAAGAAGAACGTAGCAGCTTCTCTGGTGCTGAATTACAGTCTG
TGAACAAGAGAGAAGGAAATATGTGCTTCACAACATATTTGAAGACAGAA
ATGGCTTCTCGGCTGCCGAGCCATGTCCGTCTTCCACATCCAAACCTCAA
TTAAGGTGTGGGGGAGTTTCTCTCATCTTCTCATTATCGACGATCTATCT
TTGATATTACCTATCACAGGTTGAACCATACTATTCTTACTTCCGTCCCA
AAATCTTCCTGCATCCAACCCTTCTACCCTTAATCTTCTACCCCGTTTAC
CTGCTACGCCGAGTACTCCAACAGCATCTTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTATCGCAAAATTCTCTGGATGAAATAGATCACCACTTCTGTGCATT
GGTCACTGTCCACCACTGATCAAATAAGTGCTATCCGAGTAGAAAATAGA
CGAAGGAAAACAGAACCCATGACACATGGAGAACCAAAACCTTGTCTCAT
AACATGTAGTTCATAGAACTAGAGGATAAATTGAAGAATCTAGATGCTAG
AAAACCTGGATCCTGTAATATCTTAAGAACCGAAGATCTCAGCGGAAGAA
CCACATCCCTTGTTATGCAATATTTCGGCTCTATCCAAGTCCTTTCATTT
TTTTTTCATGCCCCTCCCCCACGTTCAGTTGTTTCTCTATGATGTTTAGT
CATCCCATTACATGAGAAAAAAAAAAAACTTCCGGTGGTTTGCATACGTT
CTCTATAAATACCCCTCTTTACATCCCTTCCCGATTGCCCACTTCGTTTG
TGTTGACTCCCATCATCCTTCTTCATCGACCTATTTTTTTTAGCCAATTC
CTTTTGGCCCTCTTTCTCAATATCTTATTACTTACTTCCTCCTCCATCCC
TTCTTTCCTTTTTCGCCACGCTCTCTGTAACTTGCGGCCCTGACCCTTGC
CCGTTCCTTCTTTTCCCCCTTTGCTCTCCTTTTCTCCCATTTCCCCCCTT
TTCCCACCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_k11.b1 MSMg01no069_k11.b1 CHROMAT_FILE:
MSMg01no069_k11.b1 PHD_FILE: MSMg01no069_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:28 2005
         (134 letters)



>mm_chr5_82651330_82651863
          Length = 534

 Score =  252 bits (130), Expect = 9e-72
 Identities = 133/134 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatatatccaggcactgaaaacctgactcctgaaaggaactcttgctttaactatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaatatatatccaggcactgaaaacctgactcctgaaaggaactcttgctttaactatag 275

                                                                       
Query: 61  gggaggatggcaacattaatttaaaaggccggtacatgcaagagtctacacaactctcca 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 274 gggaggatggcaacattaatttaaaaggtcggtacatgcaagagtctacacaactctcca 215

                         
Query: 121 taggaaagagaaaa 134
           ||||||||||||||
Sbjct: 214 taggaaagagaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no069_k11.g1 MSMg01no069_k11.g1 CHROMAT_FILE:
MSMg01no069_k11.g1 PHD_FILE: MSMg01no069_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:28 2005
         (189 letters)



>mm_chr5_82512696_82513284
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatcaaataagtgctatccgagtagaaaatagacgaaggaaaacagaacccatgacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatcaaataagtgctatccgagtagaaaatagacgaaggaaaacagaacccatgacac 260

                                                                       
Query: 61  atggagaaccaaaaccttgtctcataacatgtagttcatagaactagaggataaattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggagaaccaaaaccttgtctcataacatgtagttcatagaactagaggataaattgaa 320

                                                                       
Query: 121 gaatctagatgctagaaaacctggatcctgtaatatcttaagaaccgaagatctcagcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatctagatgctagaaaacctggatcctgtaatatcttaagaaccgaagatctcagcgg 380

                    
Query: 181 aagaaccac 189
           |||||||||
Sbjct: 381 aagaaccac 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)