BAC Information

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BAC

Clone NameMSMg01-069L23
Chromosome5 (Build37)
Map Location 128,465,259 - 128,465,702
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069L23.T7 (MSMg01no069_l23.b1)MSMg01-069L23.TJ (MSMg01no069_l23.g1)
ACCAG293932AG293933
length710727
length of high quality
(start - end)
447 (38 - 484)32 (73 - 104)
definitionCHROMAT_FILE: MSMg01no069_l23.b1 PHD_FILE: MSMg01no069_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:35 2005CHROMAT_FILE: MSMg01no069_l23.g1 PHD_FILE: MSMg01no069_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATTCTC
GGGTATACCTGGCTACAGGCGTGGTTTTGACAAATGCTAGTTGGTAGACA
TCTAGACATCTCAGTGCCCATAGGCATGCTCTGAAATTGGATCCTGGGTA
GATGACCAGAACTATTTTATCAGCCCTTAGCTCGTCTCATTAACTGGCTA
GTTCTGTCTCTTCAGAGTTTCTTTTCACTACAATGTCTGCTCTTCTCTGT
GACAAGTGAGAAAGAAAATGGTTTTGTGTCAGTCTTTCTTGAGGATGAAA
TGAAAGAAGTGGAGGTGAGAACTCGGATGGGTTGGCTGAGAGGGGCTCTT
AAGGCATCGTTAGTGAGCAGACATGTCTCTAGCGACCCAAGTTTTACATC
TTCACAGAAGTGTCTTTGAACAATGTCATCTATTATTATCTGCTGTGCCT
TTTCATACAGAACTGGCTTATGGAAACATGTCGATTACACCGCCCAACAC
TCAATCTCTCTCACAGGAAAAGCTCAGGTAGAGCTCCTGATAACAAACAA
GGTTAAGATGGCTAATTAGAGATCATGATATTGCATGGACAGAATCCAAT
ATATAAGCCACCTACTCTGACATTTTAGGAAGAGATTCTGAGTACAGAAT
TCATGATGGTCTAATGCATCCCCTTTTATTCACACACATTCTTTTTTCCT
CACCTCTTTG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCGAAATACTTGCGAGGTGACATCCCGAGATAGAACAGGCT
AAGTCCCAAAGACAGATGCCCGAAGTCTCAGTGTTATTTCCAAGTCATTT
CTTAGGAGCATTGTCCAGTATACCGGTTTAGGACGTGAGGCCATAGCCTC
TGCAGGCTACCTGTATGTCTACTGGTAGGGCTTACGTATTATGCCCGAGG
CCCAAGGTGACTTTTTATAGCTTTAACATGTTTGATCTGTCCTCGTTTTG
TACAACAACCTATACAGCTTCTTTTCTTTGTGAAAAGTTCCCTGGTGCCT
TCTCTAGCCTGTTTTGTATCCCAGCTTCGCCAGAAAACATTCCGCCAGTC
CAGTCAGTTACTGTATGTGCAATCCACTGTTTTTTCATCCATCATGTACG
AATGTATCGATTATTGTATCCGCCCCTTTTGTTTCCACTATCGAATCCTT
GTTTGTTGTCACCCCCTTTCCCTCTTACTGTCATTTTTTTACCCCTCCTA
CCTCTGTTTCGTTAACCTGCCTTTTGTTTTGTGCTTTCCCCCCCCTTTGC
CCACCTTTTTTTACCCCCCCCTTTTTTTTATCCTACTTCCACTCTATTCC
CCTCCTCTTTCATTTTTGCTCATGCTCGCGATCGTTCGCGCTTTCCACGC
GCCATTCTTCTCTTTGTTTTCATTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_l23.b1 MSMg01no069_l23.b1 CHROMAT_FILE:
MSMg01no069_l23.b1 PHD_FILE: MSMg01no069_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:35 2005
         (447 letters)



>mm_chr5_128465054_128465902
          Length = 849

 Score =  797 bits (412), Expect = 0.0
 Identities = 436/444 (98%), Gaps = 2/444 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattc-tcgggtat-acctggctacaggcgtggttttgacaaatgctagttggtagaca 63
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatcgggtatcacctggctacaggcgtggttttgacaaatgctagttggtagaca 265

                                                                       
Query: 64  tctagacatctcagtgcccataggcatgctctgaaattggatcctgggtagatgaccaga 123
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 tctagacatctcagtgcccataggcatgctctggaattggatcctgggtagatgaccaga 325

                                                                       
Query: 124 actattttatcagcccttagctcgtctcattaactggctagttctgtctcttcagagttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actattttatcagcccttagctcgtctcattaactggctagttctgtctcttcagagttt 385

                                                                       
Query: 184 cttttcactacaatgtctgctcttctctgtgacaagtgagaaagaaaatggttttgtgtc 243
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 386 cttttcactacaatgtctgctcgtctctgtgacaagtgagaaagaaaatggtttcgtgtc 445

                                                                       
Query: 244 agtctttcttgaggatgaaatgaaagaagtggaggtgagaactcggatgggttggctgag 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agcctttcttgaggatgaaatgaaagaagtggaggtgagaactcggatgggttggctgag 505

                                                                       
Query: 304 aggggctcttaaggcatcgttagtgagcagacatgtctctagcgacccaagttttacatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aggggctcttaaggcatcgttagtgagcagacatgtctctagcgacccaagttttacatc 565

                                                                       
Query: 364 ttcacagaagtgtctttgaacaatgtcatctattattatctgctgtgccttttcatacag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 ttcacagaagtgtctttgaacaatgtcatctattattatctgctgtgccttttcatagag 625

                                   
Query: 424 aactggcttatggaaacatgtcga 447
            |||||||||||||||||||||||
Sbjct: 626 gactggcttatggaaacatgtcga 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 849
Length adjustment: 10
Effective length of query: 437
Effective length of database: 839
Effective search space:   366643
Effective search space used:   366643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)