BAC Information

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BAC

Clone NameMSMg01-069M17
Chromosome5 (Build37)
Map Location 72,622,339 - 72,622,527
singlet/doubletsinglet
Overlap geneAtp10d
Upstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
Downstream geneCorin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M17.T7 (MSMg01no069_m17.b1)MSMg01-069M17.TJ (MSMg01no069_m17.g1)
ACCAG293968AG293969
length684701
length of high quality
(start - end)
233 (106 - 338)189 (116 - 304)
definitionCHROMAT_FILE: MSMg01no069_m17.b1 PHD_FILE: MSMg01no069_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:38 2005CHROMAT_FILE: MSMg01no069_m17.g1 PHD_FILE: MSMg01no069_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCACTCCTATAGGCAGAGGATCCGCGGAATTCATAAGTGCTATGTTCA
GGTTGTTGTTAGGAACTATGCTTGTTTAATGAGTTAGTGGTTGTTGATTC
TCCTCCAATAATCATAACTTCACTAGCACTGAGAAGTTAGCTAGGTTTCC
AGTAACACTCATAGTCTCCTGCCTGTTAAGAATGTCTAAAGTCCATTTTC
AGAGCTGTTGGTTACCACCAAGGTACGTGTGCCACTGCTACACCCTTAGG
GTTATTGTACCATGATGGTCATTGATATGGTTCGCAGGCATCATGGTTAG
TTAGTACAAACTACTGTAACTTGCCCCTCTCCTTTGGAATTATTCTTGGC
ACCCTCCGCCCACTCATGATAGCTAGTAGTCAGGGAGTGGGCATTCATCT
TCAGTTAAAAAATCAAAAATCTCTGGCGCCTATTTCTGAAGCGCATGGTG
TCCTTGTGAATAGGCACTTATCTTTAACCTGTAAGAGGGGAATAGACAAC
ATTTTCTATATTGCTAGTTCTCAAGTCCAATTTTACCACATTATATTTTC
ACATGATTAAAAGTGTGTCTATTTCCCATTCTGCTTTTGAGGTAATAACC
TACCCTATGCTTTCTCTTACTGAAAACCTGATTCCCATTTGCGCAAGAAA
AAGCCCCCATGCCCAAGTTCTTTCCACAGTTAAA
ATGTGAGAGCCTGGCGGCGCCTGGTTTCATCAATAGGTGACCTATAGAAG
GTTCCCAAAATAATAATCCTGCAGGCTTTAGCTTAAATGCCACATCTTCA
AATAGTTCTCCCTACACTTTTTCTCTAAGATTCTAAGAGTGAGGACAAGT
TGCAGTGAGCTATGATGTTTTCTAAGTGTTAACTTTCAAAAGAAGCACCC
AGGAACTGCATATCGTGAACATCCCAGTTCAAAGCTCACCTTACCTGAGT
TCACTCAGGGCTTTCTCTTTACATACTGTGAATGACAGTATGCAACAGAG
CAGATATTTTTTTGCATAAACCCTCTCTTATGGATGCCTTGGGTATTTTT
GTTTTTATACCCCCCGCCCCTCATGTACAATAGATTCCTATTCTGTTTTC
CCCTTTTCTTTATATACAAAAAAAAGAATTCTCGCAGGGCATACAACGTT
TTTGTATCTATTCTACGTTATTCTTCCCTCCTTTTGATTCTCTTCCTGCG
TCTTATACCCACTCTGGTTCCCTATCTTGCTGACATTACACGGTTTGCCA
TTGCATTTCTCCCTCTATCCTGTTCTTATTTCTTTTCGTCCCCCTATGCG
AGCATCAAATTGCTCCGCCTTTTTTCCTGCCACCTTCCTTCCTTCACTGT
CTTCTTTATCCCCTTTTTTTCTATTCCCCTTTCCCCCCCTTACCCCACCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m17.g1 MSMg01no069_m17.g1 CHROMAT_FILE:
MSMg01no069_m17.g1 PHD_FILE: MSMg01no069_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:39 2005
         (189 letters)



>mm_chr5_72622139_72622727
          Length = 589

 Score =  311 bits (161), Expect = 1e-89
 Identities = 182/189 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttttctctaagattctaagagtgaggacaagttgcagtgagctatgatgttttctaa 60
           |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 389 actttttctctaagattctaagagtgaggacaagttgcagagagccatgctgttttctaa 330

                                                                       
Query: 61  gtgttaactttcaaaagaagcacccaggaactgcatatcgtgaacatcccagttcaaagc 120
           ||||||||||||||||||||||| |||||||||  |||| ||||||||||||||||||||
Sbjct: 329 gtgttaactttcaaaagaagcactcaggaactgtgtatcatgaacatcccagttcaaagc 270

                                                                       
Query: 121 tcaccttacctgagttcactcagggctttctctttacatactgtgaatgacagtatgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcaccttacctgagttcactcagggctttctctttacatactgtgaatgacagtatgcaa 210

                    
Query: 181 cagagcaga 189
           |||||||||
Sbjct: 209 cagagcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)