BAC Information

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BAC

Clone NameMSMg01-070D22
Chromosome5 (Build37)
Map Location 35,879,925 - 35,880,157
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz
Downstream genePlk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070D22.T7 (MSMg01no070_d22.b1)MSMg01-070D22.TJ (MSMg01no070_d22.g1)
ACCAG294312AG294313
length701702
length of high quality
(start - end)
240 (68 - 307)334 (70 - 403)
definitionCHROMAT_FILE: MSMg01no070_d22.b1 PHD_FILE: MSMg01no070_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:14 2005CHROMAT_FILE: MSMg01no070_d22.g1 PHD_FILE: MSMg01no070_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCGCTATACGACTCCTATAGTTCCCAAAACCGCGGAATTCTCTA
CCTATGCCCGCATCTGACAAGTTCCTGGAATGCTGGACAAAACCTAGGTA
GGGTGGTTCAGAGAGAAGGGCACTGAGAGTCACCCTGGCCATACAGCTCT
GCCTGGAGCTAGTCACCTTTACCTTCTGCAGGTCCAGGTCCTGCACCTGG
GTACTGGGGAGTGGCTCACTGTAGCTCTCAAGCAATGGGCAGAGCCAGGT
CTGGCCTGGAGGTCAGACTGCCTTGGTTAAGGTCAGGAGGAGAGATGCTA
ATGGCCACTCTTTTACGGATGGGCCAGGGTCAGTCAAGCCAAAGCCCTTA
GTCCTTGCTAGCTGCAGGTACAGGGATCCAGAAAGGGGCCACCAGTACAT
GGGTTCCGAGGCAGCGATGTGCCCAGGCACTCCATTATGCCCAGCAAGAT
GGGAAGGACATGTGACTGACAGCCAGATGGATATCACACATGTCCTATAT
AATGTCAGTAATACTGGGTCACTGGCTGCTCACAGTGTTTGCTTGATATG
GTGTTTTGCTAAATCTCCTTGGGCATGTGTTCATTCATTCTGGACACCTG
AAATGCTTGAAAGTTCTGCCACACATGACTATGCACGGTTGTGATTAAGG
TTCTTAGAATATTATTTTTTTTGTTCACGAGTTTCTTTATGTACTCCCCC
G
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTGTGCCCCATTTTAAATTG
GATAATTTGGTTTGTTGATATCTAGTTTCCTGAGTTCTTTGTATATTTTG
GTTATTAGCCCTCTGTCAGATGTGGGGTTGTTTCCTATTCTATAGGCTGT
CATTTTGTCCTATTGAGCGAGTCCTTTGCCTTTACAGAAGCATTTCCTAA
GTCCTATTTATCAATCGTTGATCTTAGTGCCTGAGTTACTGGTGTTCTGC
TCAGGAAGCTCTCTCTTGTGCCGGTGAGCTCAAGGCTATTCCCCACTTTC
TTTTCTATTAGGTTCAGTGTATCTGGTTTTATGTTGATATATTCGATCAA
CTCGGACTGTAGCTTTGTGTAGAGTGATAGATATGGATCTATTTTTATTC
TTCTACATGCAGATACCCAGTTAGACCTGTACCTTTTATTGAAGATGCTC
TCTTTTTTCCATTGTATATCTGTGGCTTCCTCATATACAATAAAAAAATC
GGCTGTCTATAGGTGTGTCTATTTATGTCTAGTTTCTTGGTTCTATTCCA
TTGATCTATGTGTCTGCTTTTATGCCTATACCTTGCACTTTTTTTTTATT
ATTCCTTTGTTTTTATTTCCTTGACTTTAGGTATTGTTTTTACTTTTACA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_d22.b1 MSMg01no070_d22.b1 CHROMAT_FILE:
MSMg01no070_d22.b1 PHD_FILE: MSMg01no070_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:14 2005
         (240 letters)



>mm_chr5_35879718_35880357
          Length = 640

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ctggaatgctggacaaaacctaggtagggtggttcagagagaagggcactgagagtcacc 67
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 ctggaatgctggacaaaacctaggtaggatggttcagagagaagggcactgagagtcacc 381

                                                                       
Query: 68  ctggccatacagctctgcctggagctagtcacctttaccttctgcaggtccaggtcctgc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctggccatacagctctgcctggagctagtcacctttaccttctgcaggtccaggtcctgc 321

                                                                       
Query: 128 acctgggtactggggagtggctcactgtagctctcaagcaatgggcagagccaggtctgg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acctgggtactggggagtggctcactgtagctctcaagcaatgggcagagccaggtctgg 261

                                                                
Query: 188 cctggaggtcagactgccttggttaaggtcaggaggagagatgctaatggcca 240
            |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 tctggaggtcagactgccttggtgaaggtcaggaggagagatgctaatggcca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)