Query= MSMg01no070_d24.b1 MSMg01no070_d24.b1 CHROMAT_FILE:
MSMg01no070_d24.b1 PHD_FILE: MSMg01no070_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:15 2005
(503 letters)
>mm_chr5_49405160_49406062
Length = 903
Score = 913 bits (472), Expect = 0.0
Identities = 493/500 (98%)
Strand = Plus / Minus
Query: 4 gaattcacaggcctattttcaaaccactacaccttaattacaacttccagtaacatgctc 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcacaggcctattttaaaaccactacaccttaattacaacttccagtaacatgctc 469
Query: 64 aagagtaatttcttttagtccccagaatcatcttaggggaaattcctctaaatctaaagc 123
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 468 aagtgtaatttcttttagtccccagaatcatcttagggaaaattcctctaaatctaaagc 409
Query: 124 agtagatcttgctgtgaatttgattatcgtaagaatagtatttccaggctctttgcattc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agtagatcttgctgtgaatttgattatcgtaagaatagtatttccaggctctttgcattc 349
Query: 184 tacagtgtgtttagttcgcttttgtgggagtgccatcaactatgactatcacaaacttat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tacagtgtgtttagttcgcttttgtgggagtgccatcaactatgactatcacaaacttat 289
Query: 244 ccttttacttctctttaactttcacgataggctttgttttcctcccccaggatttgctct 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 288 ccttttacttctctttaactttcacgattggctttgttttcctcccccaggatttgctct 229
Query: 304 tgataagttgtattgatctcattcctgaccacaacaactcttataaaaacaacatttaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgataagttgtattgatctcattcctgaccacaacaactcttataaaaacaacatttaat 169
Query: 364 tggggctggtgtacatattcagaggttcagtccattatcatcaaggctggagcatggcag 423
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tggggctggtttacagattcagaggttcagtccattatcatcaaggctggagcatggcag 109
Query: 424 cagcctggcaggcattgtgctgagagttctacagcttcatctaaaggcagctaggggact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cagcctggcaggcattgtgctgagagttctacagcttcatctaaaggcagctaggggact 49
Query: 484 gctcatttccagttagctaa 503
||||| ||||||||||||||
Sbjct: 48 gctcacttccagttagctaa 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_d24.g1 MSMg01no070_d24.g1 CHROMAT_FILE:
MSMg01no070_d24.g1 PHD_FILE: MSMg01no070_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:15 2005
(488 letters)
>mm_chr5_49243163_49244053
Length = 891
Score = 571 bits (295), Expect = e-167
Identities = 366/393 (93%), Gaps = 11/393 (2%)
Strand = Plus / Plus
Query: 103 atataatattacattgcatcttaacaaacagctttgatagaaatgtgtattaacaaggtt 162
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 303 atataatattacattgcatcttaacaaacagttttgatagaaatgtgtattaacaaggtt 362
Query: 163 ttcagaagg--aaaaatctaagtaagactcaggtttaaaatgtgccacattcactgaact 220
||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct: 363 ttcagaaggaaaaaaatctaagtaagactcggggttaaaatgtgcctcattcactgaact 422
Query: 221 gat---tagaaaaagactccattgaa--ttccatatatgactatgaaagctttatttttt 275
||| ||| ||||| |||||||||| | |||| ||||||||||||||| ||||||||
Sbjct: 423 gataagtag-aaaaggctccattgaacct--catacatgactatgaaagctgtatttttt 479
Query: 276 aactctaatcatattctctatgcccctaaagtctgtttagcttgactattatttctggag 335
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 480 aactctaatcatattttctatgcccctaaagtctgtttagcttgactattttttctggag 539
Query: 336 ttcacaaaatgaaaagtgcagggttgtgatccttcaaaggaaaggaccaagtgataggat 395
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctcactaaatgaaaagtgcagggttgtgatccttcaaaggaaaggaccaagtgataggat 599
Query: 396 tttttgactgtgctactgagctgctccactttgccttcagattctaagtgaatttggcca 455
||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 600 attt-gactgtgctgctgagctgctccactttgccttcagattctaagttaatttgtcca 658
Query: 456 tattctgctttgatctagttgatgcttcaggat 488
|||||||||||| ||||||||||||||||||||
Sbjct: 659 tattctgctttggtctagttgatgcttcaggat 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 891
Length adjustment: 10
Effective length of query: 478
Effective length of database: 881
Effective search space: 421118
Effective search space used: 421118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
