BAC Information

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BAC

Clone NameMSMg01-070L03
Chromosome5 (Build37)
Map Location 131,238,270 - 131,238,433
singlet/doubletsinglet
Overlap geneCaln1
Upstream geneGbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L03.T7 (MSMg01no070_l03.b1)MSMg01-070L03.TJ (MSMg01no070_l03.g1)
ACCAG294655AG294656
length764686
length of high quality
(start - end)
164 (131 - 294)139 (67 - 205)
definitionCHROMAT_FILE: MSMg01no070_l03.b1 PHD_FILE: MSMg01no070_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:51 2005CHROMAT_FILE: MSMg01no070_l03.g1 PHD_FILE: MSMg01no070_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTTTNNNNNNNNNNNCCCCCCCCCNNNNNNNNNNCCNCNNNCC
CTCCTTCCTCTTATTCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCA
GAGGATCCGCGGAATTCTTCCCCTATCCAAATGTAAAAGGCATCTACTAC
CATCTGCTCATAAAGTCCCAGTGACAAAACAAGGTACGATTCCACCAAAG
TTCTTCCTGGGGAACCAGCCTATCAGACTTTCCTACAGAGTGCAGGGGAG
GGGCTGACCCCAAAGAGCAGATATAGAGCATAGTCTTCAGTGAACATGGA
TAATGGCTTCCCCATAGCTACACTGCTACCTCAGTTCACCTTCCTCCATC
TGTGTACGTTAGCTCATCCCTGAGGCTCCATCCATGTCTTACTCCGAGAG
ACCACCTGCAATGATAGCAGACTTGCATACATACATTCGGGAGGAACGTT
TGCAGCTTCCGGTATCCCTACGCATGGCCTCCCCCAATGTCAGTCTTCCG
GAAGCATATTTTCGAAGAACGCTTGTTATAAGGCCACTGCTGGTCTCCAG
AAGATGTAAGCTGTACGTTTCCCACCACCTTGCCCCAAATCATTTGCGGA
CTATCCCATTCACATGCAGCATATTGACCTTCTCCATTTGAAATAGGCAC
ATCAAGTGTTATCGCGCCGAATTTGCCTTCCAACGGAACAGTCCTTAACT
TTCGTTCCTTTGCGCATGAATGCTGTCCCTGACCCAATGTCTCCCTTTTT
AGGATTATTGAGAT
NTCCATGATAGGGTAGGCTGGAAGCGCCTGTTCAAAAAAGGAGGNGAACT
ATAGAAGTTCCGCGAAATTCCTGATTTGATTCAAATAATTTTAGGAAGAA
ATTTTTAGAGCTGGTCTTAGTTGCTTTGCTAGAAAGATGTAATGAAGTTG
TAATCAAGAATAGAATGTGCTCACTCCTCGTATAGTAAGTAAAGGCTGCA
TAGTATGAAATCCAATGATCTTTCATAATCACACTAAAATGAGAAATATA
AATAGACTTGGGACACATTTGTATCCAAGGGAAAACATTTAAGTCCAAGG
ATAAAGACACATGTGTGCACTATAATAAGATAAGGCCATATAAAAACTGT
TGCCTAACTTATACTGAGCATATTTGAATGAAACACTGCTTTGAACTTAA
TACCAACCAACATCCTTCTGAAACTCTCATTTTATGTTACATGTTATCTA
GGAGGTAATTTTCTAAACAACTTTTTGTCTAATATTATATTATTAGGCTA
CAGAATATATATCAACTTGTTGCTTGACTGGTTTGCCTAGGGTACATCTT
GCCCCATTCATCGATACTACTATATATCAATCATTCCTTAAATGCTATTA
TCCATCCCTCCATGCATTCTATCTATCGATTCTAATCCTTATATTGATTT
ATCCTATTTTTCGATCCTTCTATGAATCTATCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l03.b1 MSMg01no070_l03.b1 CHROMAT_FILE:
MSMg01no070_l03.b1 PHD_FILE: MSMg01no070_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:51 2005
         (164 letters)



>mm_chr5_131238070_131238633
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtaaaaggcatctactaccatctgctcataaagtcccagtgacaaaacaaggtacgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtaaaaggcatctactaccatctgctcataaagtcccagtgacaaaacaaggtacgat 260

                                                                       
Query: 61  tccaccaaagttcttcctggggaaccagcctatcagactttcctacagagtgcaggggag 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaccaaagttcttcctggggtaccagcctatcagactttcctacagagtgcaggggag 320

                                                       
Query: 121 gggctgaccccaaagagcagatatagagcatagtcttcagtgaa 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctgaccccaaagagcagatatagagcatagtcttcagtgaa 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)