BAC Information

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BAC

Clone NameMSMg01-070M17
Chromosome5 (Build37)
Map Location 103,831,098 - 103,982,074
singlet/doubletdoublet
Overlap geneLOC100041049, Ptpn13
Upstream geneLOC625780, Arhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070M17.T7 (MSMg01no070_m17.b1)MSMg01-070M17.TJ (MSMg01no070_m17.g1)
ACCAG294731AG294732
length656680
length of high quality
(start - end)
512 (57 - 568)409 (74 - 482)
definitionCHROMAT_FILE: MSMg01no070_m17.b1 PHD_FILE: MSMg01no070_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:59 2005CHROMAT_FILE: MSMg01no070_m17.g1 PHD_FILE: MSMg01no070_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,981,567 - 103,982,074)(103,831,098 - 103,831,506)
sequence
CGGCGCAATACACTCCTATTGCAGAGGATCCGCGGAATTCTAGGCAACAC
GGGCTAAAAGGAGACTGTCTTTAGAAACTATCCCCCACATAAATAATTGG
GTGGTTGTACTACTGTACCACAGATATAACTGGGTGGGGGTACAGCAGCA
CCAAGCAGACCAAGACAAACCCCTCCTTCTTTAGTAATGTAATTGAGAGG
GGAGCCTGGAGTACACGCTGGTAAAACTTCTGGCTTGTTTGTGTTTTGTC
TTTTGTTAAAGTAGCAGGATAGAATAGATATACATCATGATAAAATGAAT
CTAGCTTCCTGAAGAACAATATTACGTAACCCCATTTCAGTTTTGGAAAA
CAAACCAGACCAAGACATCCTTCTTTGGTTGGTCAGCACTTAAGGTGACA
TTCCGCATCGTGAGCTGTTTTATCACCCTGACCTCTCATAGCACAGGTAT
AACCAGGCATTTTCTCACTGGGTGTTTAATACTTGTCTCCTCTGATAAAA
GCTTACTTTCCATGAAGCCACGGGCTCTGTATTTTGTACGTTCTACACAT
GCAATAAATATCTGAACCATGGATCCATTTTCCATAGAACATCTATTAAA
AGAAAATAGAATCCTGTAAAGGAAAAATGAATTTACTCCGAATTTCCCTT
TTCTTC
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGCTTCCTTTGCCACCATCAGTACCT
GTAGCTGGACAATAACCCCCTCAGATCTAAGCAAATATCCCTTAGGCTGT
TTAGAGGCTTCAGAATCCTGAGGGGTGAATTTAGGTAGGGCCATGACAGT
CTTGGAGAAGAATTTTTCCAAGTGTACAGGTCAGACGACTCTGGAGGGAA
CACAATAGAGCCTTTGCCTAAGCTGGTGGAACAGACTGTAGCCATTCATG
CCAGAGCGGAGGCTCGAGGTTCAAGGGCCTCCCACACTTGAAGCTGTGCT
TGCAGACTTGACATCCTGAAGTTTCATCCAGGAGATTGGGAGGAAGCCTA
AAGCTAAAGTATGCCTCTGGGAGGCTCCTCCCTCCTCCATTCCTCTTGGG
GGGTACACACATGAGATTCACTCGGAACACTAGGAGGTGGGGACAGGAGG
TAAGAGGGGTGGGCCTTCCCCCTGCACTGACAGGCTATTGAGGCCAACTC
TTGTGTGTAAATTTGTTTCTAATAGCTCAGAGTGATACATTTAATGAATA
TTTTCAGAGCACGGCTTGCCCACTCTTCCCAATTTGGCCAAAAAAACCCC
CTGTTAGATGAACTACTAATTTTTTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_m17.b1 MSMg01no070_m17.b1 CHROMAT_FILE:
MSMg01no070_m17.b1 PHD_FILE: MSMg01no070_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:59 2005
         (512 letters)



>mm_chr5_103981367_103982278
          Length = 912

 Score =  905 bits (468), Expect = 0.0
 Identities = 498/508 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggagactgtctttagaaactatcccccacataaataattgggtggttgtactactgt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 708 aaaggagactgtctttagaaaatatcccccacataaataattgggtggttgtattactgt 649

                                                                       
Query: 61  accacagatataactgggtgggggtacagcagcaccaagcagaccaagacaaacccctcc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 648 accacagatataactgggtgggggtacagcagcaccaagcggaccaagacaaacccctcc 589

                                                                       
Query: 121 ttctttagtaatgtaattgagaggggagcctggagtacacgctggtaaaacttctggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttctttagtaatgtaattgagaggggagcctggagtacacgctggtaaaacttctggctt 529

                                                                       
Query: 181 gtttgtgttttgtcttttgttaaagtagcaggatagaatagatatacatcatgataaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtttgtgttttgtcttttgttaaagtagcaggatagaatagatatacatcatgataaaat 469

                                                                       
Query: 241 gaatctagcttcctgaagaacaatattacgtaaccccatttcagttttggaaaacaaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaatctagcttcctgaagaacaatattacgtaaccccatttcagttttggaaaacaaacc 409

                                                                       
Query: 301 agaccaagacatccttctttggttggtcagcacttaaggtgacattccgcatcgtgagct 360
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 408 agaccaagacatccttctttggtaggtgagcacttaaggtgacattccgcatcgtgagct 349

                                                                       
Query: 361 gttttatcaccctgacctctcatagcacaggtataaccaggcattttctcactgggtgtt 420
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 348 gttttatcaccctaacctctcatagcacagctataaccaggcattttctcactgggtgtt 289

                                                                       
Query: 421 taatacttgtctcctctgataaaagcttactttccatgaagccacgggctctgtattttg 480
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 288 taatacttgtctcctctggtaaaagcttactttccacgaagccacgggctctgtattttg 229

                                       
Query: 481 tacgttctacacatgcaataaatatctg 508
           ||||||||||||||| ||||||||||||
Sbjct: 228 tacgttctacacatgtaataaatatctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no070_m17.g1 MSMg01no070_m17.g1 CHROMAT_FILE:
MSMg01no070_m17.g1 PHD_FILE: MSMg01no070_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:59 2005
         (409 letters)



>mm_chr5_103830898_103831706
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcttcctttgccaccatcagtacctgtagctggacaataaccccctcagatctaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ctgcttcctttgccaccatcagtacctgtagctggacaataaccccctcagatttaagca 260

                                                                       
Query: 61  aatatcccttaggctgtttagaggcttcagaatcctgaggggtgaatttaggtagggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatcccttaggctgtttagaggcttcagaatcctgaggggtgaatttaggtagggcca 320

                                                                       
Query: 121 tgacagtcttggagaagaatttttccaagtgtacaggtcagacgactctggagggaacac 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgacagtcttggagaagaatttttccaagtgtacaggtcagacaactctggagggaacac 380

                                                                       
Query: 181 aatagagcctttgcctaagctggtggaacagactgtagccattcatgccagagcggaggc 240
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 381 aatagagcctttgcctaagctggtagaacagactgtagccattcatgccagagccgaggc 440

                                                                       
Query: 241 tcgaggttcaagggcctcccacacttgaagctgtgcttgcagacttgacatcctgaagtt 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgaggttcaagggcctcccacactggaagctgtgcttgcagacttgacatcctgaagtt 500

                                                                       
Query: 301 tcatccaggagattgggaggaagcctaaagctaaagtatgcctctgggaggctcctccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatccaggagattgggaggaagcctaaagctaaagtatgcctctgggaggctcctccct 560

                                                            
Query: 361 cctccattcctcttggggggtacacacatgagattcactcggaacacta 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctccattcctcttggggggtacacacatgagattcactcggaacacta 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)