BAC Information

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BAC

Clone NameMSMg01-070N16
Chromosome5 (Build37)
Map Location 141,402,264 - 141,583,593
singlet/doubletdoublet
Overlap geneCard11
Upstream geneA930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12
Downstream geneLOC623466, Sdk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070N16.T7 (MSMg01no070_n16.b1)MSMg01-070N16.TJ (MSMg01no070_n16.g1)
ACCAG294776AG294777
length697686
length of high quality
(start - end)
267 (43 - 309)337 (72 - 408)
definitionCHROMAT_FILE: MSMg01no070_n16.b1 PHD_FILE: MSMg01no070_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:04 2005CHROMAT_FILE: MSMg01no070_n16.g1 PHD_FILE: MSMg01no070_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,402,264 - 141,402,528)(141,583,257 - 141,583,593)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCCTGTACCCCCGGCAAACCTTGAACTCAGAGATCCACCTGCCTCTGT
CTCCCGAGTGCTGGATTAGCACGTGCCACCACGGCCTGTTACCAGCCTCT
TACTTTCACATGTAACACATCACGTAACACAAGGGACACACTATCATGTC
AGTTTTCTCACTGGTATAATAAACATTCAAATACTGCTTGTAGCCAGGCT
TGGTGTCACACTTGTCATCTTAGCACTTGGGAGGCTGAGACGGGAGAAGC
TCAAGTGTGATACTAGCCTGGGCTGCACAGCAAGACACTGTCCTTAAAAT
ATATCTTGTGAACTGGGGAGATGGCTCAGTCAGTAAAGTGCTTGCCTTTC
AAACATGAAAACCTGAGTGGAGATCCCCAGAATCCACATAAAAAAATATA
CCATGTAATCCTATTGTTGGAGGCAGAGGCAGGAGGGTCCCTGCAAGCTT
AAGCCTAGGCTAAGGGGTGAAGTTCCAGGCACAGACAAAATGTCATCTCA
CAGAAGAGGTGGTAGTGACTGACGACCAATAGTTGATGTTACATGCATGT
GCACACATTATGCATTGACACATACACACATCCACACACACACATAATCT
CACACACGTCCTTTATTCCCCCCCCTGTTTTATTTTTATGCCAGTGG
AATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTAAGTAGGCTATGTGGCTGGCCAGTGA
GGCCCAGGCATCCTCCTGTCTCTGCCGTCCTGGAGCTTGGATTGCAAATA
GGCACCACCGTTCATTGCTTGGTGCTGGAGATGAAACTCAGGTCCTTAAG
CTTGCAAACAAGCAGTCTATCAAGTCAGCCATCTCTCTCTCGTGGCCGCT
TTCCTCATTTAAGTTGACTTTCACAGATATTTTTGTCACAGTGACAAAAG
CTGACATTTAGTTTTATCTTTTCAATGCTTTAACAAAACCCAGCACTGGA
ATAATTTGCCATTAGTATCATTTGCTAGATTATTTGTGACAGTGTGCCTA
TGTAGGGATAGGGCATCGTGAGGAACGCATTGCAGGATACACTAAGATTC
TGCACATGTGAGCTGTGCCCAGCATGGCTCCTGGACGGAGAACAAGCTTC
ATTGTGACCTCTTGGGTCTGCAACTGGAAGTTCAAGGTCAAAAGGTCATC
TTATATGAGTTCTTGTTGTCAAGTCATAAATTTCATTATAAAGAGAACTC
TTATACAGACTATAGTTTCTGAGGACCTGGTCATTGGATACAGATGGTTT
TGTTGCTGCCGCTGTCGTTTTGTTTTTGTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_n16.b1 MSMg01no070_n16.b1 CHROMAT_FILE:
MSMg01no070_n16.b1 PHD_FILE: MSMg01no070_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:04 2005
         (267 letters)



>mm_chr5_141402062_141402728
          Length = 667

 Score =  474 bits (245), Expect = e-138
 Identities = 260/265 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcaccctgtacccccggcaaaccttgaactcagagatccacctgcctctgtctcc 62
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaccctgtagacccggcaaaccttgaactcagagatccacctgcctctgtctcc 262

                                                                       
Query: 63  cgagtgctggattagcacgtgccaccacggcctgttaccagcctcttactttcacatgta 122
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 263 caagtgctggattagcacgtgccaccacggcctgtcaccagcctcttactttcacatgta 322

                                                                       
Query: 123 acacatcacgtaacacaagggacacactatcatgtcagttttctcactggtataataaac 182
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acacatcacataacacaagggacacactatcatgtcagttttctcactggtataataaac 382

                                                                       
Query: 183 attcaaatactgcttgtagccaggcttggtgtcacacttgtcatcttagcacttgggagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attcaaatactgcttgtagccaggcttggtgtcacacttgtcatcttagcacttgggagg 442

                                    
Query: 243 ctgagacgggagaagctcaagtgtg 267
           |||||||||||||||||||||||||
Sbjct: 443 ctgagacgggagaagctcaagtgtg 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no070_n16.g1 MSMg01no070_n16.g1 CHROMAT_FILE:
MSMg01no070_n16.g1 PHD_FILE: MSMg01no070_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:04 2005
         (337 letters)



>mm_chr5_141582891_141583627
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaagtaggctatgtggctggccagtgaggcccaggcatcctcctgtctctgccgtcct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 703 actaagtaggctatgtggctggccagtgaggcccaggcatcctcctgtctctgctgtcct 644

                                                                       
Query: 61  ggagcttggattgcaaataggcaccaccgttcattgcttggtgctggagatgaaactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggagcttggattgcaaataggcaccaccgttcattgcttggtgctggagatgaaactcag 584

                                                                       
Query: 121 gtccttaagcttgcaaacaagcagtctatcaagtcagccatctctctctcgtggccgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtccttaagcttgcaaacaagcagtctatcaagtcagccatctctctctcgtggccgctt 524

                                                                       
Query: 181 tcctcatttaagttgactttcacagatatttttgtcacagtgacaaaagctgacatttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tcctcatttaagttgactttcacagatatttttgtcacagtgacaaaagctgacatttag 464

                                                                       
Query: 241 ttttatcttttcaatgctttaacaaaacccagcactggaataatttgccattagtatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttttatcttttcaatgctttaacaaaacccagcactggaataatttgccattagtatcat 404

                                                
Query: 301 ttgctagattatttgtgacagtgtgcctatgtaggga 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttgctagattatttgtgacagtgtgcctatgtaggga 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)