Query= MSMg01no070_n17.b1 MSMg01no070_n17.b1 CHROMAT_FILE:
MSMg01no070_n17.b1 PHD_FILE: MSMg01no070_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:04 2005
(525 letters)
>mm_chr5_89502370_89503294
Length = 925
Score = 990 bits (512), Expect = 0.0
Identities = 518/520 (99%)
Strand = Plus / Plus
Query: 6 gaattcatattatggctatgttaatatagttcaatctaaggtttagatgagctctgtaag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatattatggctatgttaatatagttcaatctaaggtttagatgagctctgtaag 265
Query: 66 aatgttttttgagaatatttattttaagctgtggctttaaagtgaatttttaaaaactca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatgttttttgagaatatttattttaagctgtggctttaaagtgaatttttaaaaactca 325
Query: 126 gttttcttcagtgtgtgtgtacaagggagaggtatgcatacagtgtgcacgtggaggtca 185
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 326 gttttcttcagtgtgtgtgtacaagggagaggtgtgcatacagtgtgcacgtggaggtca 385
Query: 186 gaggacaactttgtggggttggttttctccttccttccacacttgtatgggtgctgagca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaggacaactttgtggggttggttttctccttccttccacacttgtatgggtgctgagca 445
Query: 246 ctgaactcaggtttcaaggctcatgtagcctttagccactgagacagcccacaaaccttt 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 446 ctgaactcaggtttcaaggctcatgtagcctttagccactgagacagcccacaagccttt 505
Query: 306 acattgatctaaaaacagaaaaaagtacattattatgctgttaagctcatatcccaaaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acattgatctaaaaacagaaaaaagtacattattatgctgttaagctcatatcccaaaga 565
Query: 366 catgaataactgcaggatgctttggcagcacctttgagcaggttccatttttgatctcct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 catgaataactgcaggatgctttggcagcacctttgagcaggttccatttttgatctcct 625
Query: 426 gtcctgtccccacccccacccccaacccatagttgtcagttgttgcctgggcctgctgca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtcctgtccccacccccacccccaacccatagttgtcagttgttgcctgggcctgctgca 685
Query: 486 tggtggatagtgggttgctgactgacttctcttgctgtct 525
||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tggtggatagtgggttgctgactgacttctcttgctgtct 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_n17.g1 MSMg01no070_n17.g1 CHROMAT_FILE:
MSMg01no070_n17.g1 PHD_FILE: MSMg01no070_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:04 2005
(586 letters)
>mm_chr5_89617096_89618079
Length = 984
Score = 1069 bits (553), Expect = 0.0
Identities = 578/587 (98%), Gaps = 4/587 (0%)
Strand = Plus / Minus
Query: 1 aattcaagttagttgcaa-tttttttgtcatctatctctgagagctgacatatttgtagt 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aattcaagttagttgcaattttttttgtcatctatctctgagagctgacatatttgtagt 725
Query: 60 gcatataaaaatgcataactggattgtatttataactaaatgtctgccattctttgtgaa 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gcgtataaaaatgcataactggattgtatttataactaaatgtctgccattctttgtgaa 665
Query: 120 ataaatatgaaaaaaaatgttagagaaaagcaaatttgactttcaaaatgactttcctag 179
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ataaatatg--aaaaaatgttagagaaaagcaaatttgactttcaaaatgactttcctag 607
Query: 180 atataaaatatcaaaaaggactgggaaaaaattccgatatgttcagtgacagaaaaatca 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 606 atataaaatatcaaaaaggactgggaaaaaa-tccgatatgttcagtgacagaaaaatca 548
Query: 240 tatttttaatgaacttcaatgatattttgatattttgaactatacaaatgtcagtcatct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tatttttaatgaacttcaatgatattttgatattttgaactatacaaatgtcagtcatct 488
Query: 300 ttacccacaccagaacgccacaaagaatatacacctattatttcccactcacttttaata 359
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 487 ttacccacaccagaacgccacaaagaatatacacctattatttcgtattcacttttaata 428
Query: 360 tgttagttgttttagtttgacagtttttacctttcaacaagaaaatgctaagagaaaaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgttagttgttttagtttgacagtttttacctttcaacaagaaaatgctaagagaaaaga 368
Query: 420 aaacagaaataggatgtcactcacctcttagaaagaactgtttacaaaatacatacctct 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaacagaaatgggatgtcactcacctcttagaaagaactgtttacaaaatacatacctct 308
Query: 480 taactctaaacacaaccaatttcaataggcccgtgatagccaagcttgacaagaatcagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 taactctaaacacaaccaatttcaataggcccgtgatagccaagcttgacaagaatcagg 248
Query: 540 gtttgagaaacgtaactacctgtgcaaccttagattttcctgtggtt 586
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtttgagaaacgtaactacctgtgcaaccttagattttcctgtggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 984
Length adjustment: 10
Effective length of query: 576
Effective length of database: 974
Effective search space: 561024
Effective search space used: 561024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
