BAC Information

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BAC

Clone NameMSMg01-071B20
Chromosome5 (Build37)
Map Location 87,424,069 - 87,424,595
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424
Downstream geneLOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071B20.T7 (MSMg01no071_b20.b1)MSMg01-071B20.TJ (MSMg01no071_b20.g1)
ACCAG294976AG294977
length709709
length of high quality
(start - end)
528 (41 - 568)353 (69 - 421)
definitionCHROMAT_FILE: MSMg01no071_b20.b1 PHD_FILE: MSMg01no071_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:24 2005CHROMAT_FILE: MSMg01no071_b20.g1 PHD_FILE: MSMg01no071_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTCCAACTCTGTTTATATCTATTCTTTTTAACTCATTCACTTCTATTTT
ATTTAAAAATTTAATAATATTAAAGGTAAACAGTGAATACTAATGATTAA
ATTGCTTTTTTTATAAAGTTCTGTCTTTTATATCCTAGGATTGTTTAATT
TAAATATATGGCTTACAGGTGGGGATATCCAACCACCTTTGAGACAGCAG
ACAAAGCTTAGATAATGATAAATTTAGTTTTGAAAACAACACATAAAATT
TAATCAACTACTTCATGAACACATTGCACAACTAATAGTTTTTTGATTTG
ACACATATGTTGACTACATTAGATATTACATATTTAGTCCTACAGGCATA
GGAATAGGCTCCTTCCTACATTATTTATGTAGAATGCATAATATATTATT
TTATACACTTCAAGGTCCCATGTTCCTAAAGATAAATATGAGCTATTTGG
AATATTATTAATGTTGTCCATGTCTTCATTTGAGATTTAGCACAGCAAAT
TTTAAAACAGAGAAAATTAAAAATTGGAAGAATATATAAAACTACTTACA
ATTTTTTATTTCGTTTAATCCCAAATTTCGATAATGGGCACCTATAGTGC
TCTCTGGATACTGACCCCTCTTAAAGTAACCATATGTAGAGAGTTGGAGT
TCTTTTGGA
AATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTACAAAAAGAGTCTCAAATGGTTCAGAAAC
AGTTAAAGAAATGTTCAAGGTTCTTACACATCAGGGAAATGCAAATCAAG
ATGACTCTGACAATCCACCTCATATCCATCAGAATGGCTAAGATAAATAC
TCAAGGGACAGTACATGTTGGTAAGGTTGTGGACAAAGATCAATCCTCTA
CTTCTTGTAGGAGTGTAAACTTGTACAACGACTTGTGAGTTATGAGCCAT
AAAATACATGATAACCACACTATAATCAGCAGATCTAAACAAGCCAAATA
ATGAGGGCCCAATGGTGGGTGGTTAACAATTTCTCAGAAAGGGAAACAAA
ATAGGTATTGGAGGTCGAGGGAACTAGGAGGGTGAGGGGATATGCAGGGA
AGCAGGGCAGAGGGCAGGCGGATCAGACATAAGGACATAGGGGAGAGAGA
AAAGAAATAACCAGGAATAGGGGGTCAATTTCAGAACATTCTAGAGACCT
GGGATGAAGGGAACCACTAGGGGGTTTAAGGGGGTAACTGTAGATTAGAC
TTCTATATGTCAGGAATACGGATCCTGATGTGTTCACTTCCTGTAATGAA
GTAATACTCCTAGTGAATGAATAAGGATAGCAACCTACCCACAAAAACTT
CATCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_b20.b1 MSMg01no071_b20.b1 CHROMAT_FILE:
MSMg01no071_b20.b1 PHD_FILE: MSMg01no071_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:24 2005
         (528 letters)



>mm_chr5_87423866_87424795
          Length = 930

 Score =  984 bits (509), Expect = 0.0
 Identities = 522/527 (99%), Gaps = 2/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtccaactctgtttatatctattctttttaactcattcacttctattttatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtccaactctgtttatatctattctttttaactcattcacttctattttatt 263

                                                                       
Query: 64  taaaaatttaataatattaaaggtaaacagtgaatactaatgattaaattgcttttttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaaaatttaataatattaaaggtaaacagtgaatactaatgattaaattgcttttttta 323

                                                                       
Query: 124 taaagttc--tgtcttttatatcctaggattgtttaatttaaatatatggcttacaggtg 181
           ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 taaagttctatgtcttttatatcctaggaatgtttaatttaaatatatggcttacaggtg 383

                                                                       
Query: 182 gggatatccaaccacctttgagacagcagacaaagcttagataatgataaatttagtttt 241
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 gggatatccaaccacctttgagacagcagacaaagcttagagaatgataaatttagtttt 443

                                                                       
Query: 242 gaaaacaacacataaaatttaatcaactacttcatgaacacattgcacaactaatagttt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaaacaacacataaaatttaatcaactacttcatgaacacattgcacaactaatagttt 503

                                                                       
Query: 302 tttgatttgacacatatgttgactacattagatattacatatttagtcctacaggcatag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttgatttgacacatatgttgactacattagatattacatatttagtcctacaggcatag 563

                                                                       
Query: 362 gaataggctccttcctacattatttatgtagaatgcataatatattattttatacacttc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaataggctccttcctacattatttatgtagaatgcataatatattattttatacacttc 623

                                                                       
Query: 422 aaggtcccatgttcctaaagataaatatgagctatttggaatattattaatgttgtccat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaggtcccatgttcctaaagataaatatgagctatttggaatattattaatgttgtccat 683

                                                          
Query: 482 gtcttcatttgagatttagcacagcaaattttaaaacagagaaaatt 528
           ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 684 gtcttcatttgagatttagcaaagcaaattttaaaacagagaaaatt 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 930
Length adjustment: 10
Effective length of query: 518
Effective length of database: 920
Effective search space:   476560
Effective search space used:   476560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)