BAC Information

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BAC

Clone NameMSMg01-071D19
Chromosome5 (Build37)
Map Location 104,336,243 - 104,522,337
singlet/doubletdoublet
Overlap geneKlhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1
Upstream geneMapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1
Downstream geneLOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071D19.T7 (MSMg01no071_d19.b1)MSMg01-071D19.TJ (MSMg01no071_d19.g1)
ACCAG295070AG295071
length703708
length of high quality
(start - end)
242 (66 - 307)197 (100 - 296)
definitionCHROMAT_FILE: MSMg01no071_d19.b1 PHD_FILE: MSMg01no071_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:34 2005CHROMAT_FILE: MSMg01no071_d19.g1 PHD_FILE: MSMg01no071_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,336,243 - 104,336,484)(104,522,141 - 104,522,337)
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTTCGCACTACGCGGAATCTTTA
TTATTTCCAAAAAGGGGCGATCTCATATACAAGAAGCTCCCTACAAGCAC
CGCCACTGTCCTCTCATGGACGTTTGCTCACATGGTATTTATGAGAAGCC
CATCTGCAGAGACACAGTTCTGCTCCTTGCTTCACAAGTTCCCGAGTATT
ACAAGATCATGAGCCTTCTGCGTTGTAAAGCATTCAGATTTCCAATAAAT
CTGCCCAATATCAAAAGGGGTTAAGCTCAAGGAGAAAGATGCTACCCTGT
GGGAGCGTGTTTTTTCCAGCACTCTGTCTACCCCTGCTTCTAAACTCTAC
TGTAAGAATGAATTCAAACTCAGAAAGATACTAATGCTAGGATTCCCAAA
ATAAATTTAAACTGTAACTAAGTAAAACCATAAATTACAATCTAGTACTG
GATCTAGGTAAGACAGTTACATTTTTCTGTACATCATACATGGTATGTGC
TTTTCCTAACCAACCATTCTAAGTGTCATAGAAGTTTTCAATTAGGATTT
TAATAAAGCTTTACTCTTTTATTTTATTATTGCGCAATTAAACTCAACTG
ATTATGGTTTATTTATATTCATGCCACTTAAATATCTTCTGTGAAAAGCT
AAATAATTTTCTTAACCGTTGATATTCTACTGAAAAACAATAATTTCCTT
ATT
ATGCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAAGAGGAAACTCATGAACAGTCAACAGA
GCAGGACAAAACCTACAGCTTCGAGGTGGACCTGAAGGATGAGGAGGATG
GAGATGGGGATTTAAGTGTAGATCCAACGGAAGGAACACCAACGCTGGAT
CTACAAGAAGGTACAAGTGAGCCTCAACAGAAAAGTCTCCCGGAGAACGG
CGATTTCCCCGCGACCGTGTCCACTTCCTTTGTGGATCCTAACCAACGCG
CACACATCACAAAGGGAGAGGAGAGTCAGGAGCAACCTGTAAGTGACTCA
CACCAGCAACCGAATGAGAGTAGCAAGCATACCCAAGAATTAAAGGCTGA
AGATAGCCTGATACAAGATCCAGACATTCCCAATGAAGAAGAGGAAGAAT
AAGAGGACTAATATAAGTAATAACAGGAAGAGCCGGATGACTTTGGTGCC
CCCAGCGATAACCTAGAGGAGGGATAAGAACCTCTGGAGGAGTATCCTAC
CATTTAGTGGTAAGTAACCTTATATCAATCTGATGACTCCTTATAAGAGT
CCAGTCAGCTCTCTCCTATTAAGTAAGACCGAGAAGCATCTCTCTGAGTA
ATTAAACCATGGTTCGGAGAGTGACTCTGATGCCTATAGCGAAAAATACG
CTTGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_d19.b1 MSMg01no071_d19.b1 CHROMAT_FILE:
MSMg01no071_d19.b1 PHD_FILE: MSMg01no071_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:34 2005
         (242 letters)



>mm_chr5_104336043_104336684
          Length = 642

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcgatctcatatacaagaagctccctacaagcaccgccactgtcctctcatggacgttt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ggcgatctcatatacaagaagctccctacgagcaccgccactgtcctctcatggacgttt 260

                                                                       
Query: 61  gctcacatggtatttatgagaagcccatctgcagagacacagttctgctccttgcttcac 120
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gctcacatcgtatttatgagaagcccgtctgcagagacacagttctgctccttgcttcac 320

                                                                       
Query: 121 aagttcccgagtattacaagatcatgagccttctgcgttgtaaagcattcagatttccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttcccgagtattacaagatcatgagccttctgcgttgtaaagcattcagatttccaa 380

                                                                       
Query: 181 taaatctgcccaatatcaaaaggggttaagctcaaggagaaagatgctaccctgtgggag 240
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 381 taaatctgcccaatatcaaaaggggggaagctcaaggagaaagatgctaccctgtgggag 440

             
Query: 241 cg 242
           ||
Sbjct: 441 cg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no071_d19.g1 MSMg01no071_d19.g1 CHROMAT_FILE:
MSMg01no071_d19.g1 PHD_FILE: MSMg01no071_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:34 2005
         (197 letters)



>mm_chr5_104521941_104522537
          Length = 597

 Score =  358 bits (185), Expect = e-103
 Identities = 194/197 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaggacaaaacctacagcttcgaggtggacctgaaggatgaggaggatggagatgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agcaggacaaaacctacagcttcgaggtggacctgaaggatgaggaggatggagatgggg 338

                                                                       
Query: 61  atttaagtgtagatccaacggaaggaacaccaacgctggatctacaagaaggtacaagtg 120
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 337 atttaagtgtagatccaacggaaggaacactaacactggatctacaagaaggtacaagtg 278

                                                                       
Query: 121 agcctcaacagaaaagtctcccggagaacggcgatttccccgcgaccgtgtccacttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agcctcaacagaaaagtctcccggagaacggcgatttccccgcgaccgtgtccacttcct 218

                            
Query: 181 ttgtggatcctaaccaa 197
            ||||||||||||||||
Sbjct: 217 atgtggatcctaaccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)