BAC Information

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BAC

Clone NameMSMg01-071H10
Chromosome5 (Build37)
Map Location 87,201,425 - 87,201,948
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071H10.T7 (MSMg01no071_h10.b1)MSMg01-071H10.TJ (MSMg01no071_h10.g1)
ACCAG295241AG295242
length701726
length of high quality
(start - end)
527 (45 - 571)292 (72 - 363)
definitionCHROMAT_FILE: MSMg01no071_h10.b1 PHD_FILE: MSMg01no071_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:52 2005CHROMAT_FILE: MSMg01no071_h10.g1 PHD_FILE: MSMg01no071_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCCACATCCGCACTAGCAACTTTCCCTTTGTCACATCCTGAAGA
CAAACTGAAAGAGTCCATACAAAAATACAACTTTCACCTCAAAAATGATA
AAAGCTTTTTCTGGTGACCACGGCCAAGACACAGAGATTTAGGTCATCCC
AAACTCTACATTCCAACATAAAAACAGTTAAGTCATAAATCAAGACCCTT
TTCAAATACATCGATGAGAACATCAGAGAGGTGAGTCAGAGAAGAATGGG
GAAGCATGCTTTCGGCTTCAGAGGCCGTCGGATAACACGCTTGCCTTTTG
GCTTGGCGGAGGTCCGGGTTCTACTCACCTAAATATATTTCAAAGGGAAA
TTGGTGCTCTGCGCTCCAAGTGACTCACTTAGTGGTCACAAGACTCCTAG
GTCAGGTACAGAGGACGGCAATAAGTGGCCATTAAGAGGGTTAAAGATGG
ACCAAGATAACTTCATGCTGGATTTGTAACATTCTAAATTTGCCACAAAA
ACTTTGATCAGTTCATCATCCTTGCAGAAGTTCCCATTTGAAGGTGCAAT
GTCTCTCTGGGAACTTTTGTTCACAAAAGGAAACTGGATTGCAGTGAATG
TGGCACCATAGCGATCATAATATAACTTTTCTTATCTACCGAAAATGTCT
T
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATATGAAAGCCATATCCTGTAGCATCTGG
TACTGCAGTATAAGAAAACCAAGAGATGTGAAACAGAGCCAGGACAACTA
TCTGAAGCTCTCAGGTCAACCAGCCTGATTTTCAGCAAGAAATAGCATGC
CTCAGAATATGAAAGGGAAACATCACACTGTGAGGGGGTGGTCTGACATC
CCATATGTGTGCCATGGCATGGGTATGCCCCACTCACAAATTAATAATCA
CAAGCATGTAAATATATGCTTATACACTGGATTTAAATACAGAGAAAGGG
AGAGGGAGAGGGAGAGGGAGAGGGAGAGGCACACTTTTCTCCCCCCCCCC
TCCCTTTTTTTTTCCCCCTTTTTATTTCTCCTTTCTCTCCTCTCCCTCCT
CCCTTTTTTTTTTTTCCCCCCCCCTTTTTCTTTTCTCCCCCCTCCTCCTT
TATCCCTTTTTCACCCTTATCCTTTTCTCCTTATCTTTACACGTTACCAC
CACAACTCACCAACACCAATTTTTCCCTATTTCCCCACCCCCACCATCAT
TTTCCCCCCCTTTTCTTCCCTCCCTCTCCTAATTCCTTTTATTTTTATTC
CCATCACCCCGACCCCTTTCCTTTTATTCTTTAATCCCCCTTTCATATAT
CCTTTCGTCTTTTTCTTACTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_h10.b1 MSMg01no071_h10.b1 CHROMAT_FILE:
MSMg01no071_h10.b1 PHD_FILE: MSMg01no071_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:52 2005
         (527 letters)



>mm_chr5_87201222_87202148
          Length = 927

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagccacatccgcactagcaactttccctttgtcacatcctgaagacaaactg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagccacatacgcactagcaactttccctttgtcacatcctgaagacaaactg 263

                                                                       
Query: 64  aaagagtccatacaaaaatacaactttcacctcaaaaatgataaaagctttttctggtga 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 aaagagtccatacaaaaatacaactttcacctcaaaaatgataaaagcttattctggtga 323

                                                                       
Query: 124 ccacggccaagacacagagatttaggtcatcccaaactctacattccaacataaaaacag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccacggccaagacacagagatttaggtcatcccaaactctacattccaacataaaaacag 383

                                                                       
Query: 184 ttaagtcataaatcaagacccttttcaaatacatcgatgagaacatcagagaggtgagtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaagtcataaatcaagacccttttcaaatacatcgatgagaacatcagagaggtgagtc 443

                                                                       
Query: 244 agagaagaatggggaagcatgctttcggcttcagaggccgtcggataacacgcttgcctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagaagaatggggaagcatgctttcggcttcagaggccgtcggataacacgcttgcctt 503

                                                                       
Query: 304 ttggcttggcggaggtccgggttctactcacctaaatatatttcaaagggaaattggtgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggcttggcggaggtccgggttctactcacctaaatatatttcaaagggaaattggtgc 563

                                                                       
Query: 364 tctgcgctccaagtgactcacttagtggtcacaagactcctaggtcaggtacagaggacg 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctgcgttccaagtgactcacttagtggtcacaagactcctaggtcaggtacagaggacg 623

                                                                       
Query: 424 gcaataagtggccattaagagggttaaagatggaccaagataacttcatgctggatttgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcaataagtggccattaagagggttaaagatggaccaagataacttcatgctggatttgt 683

                                                       
Query: 484 aacattctaaatttgccacaaaaactttgatcagttcatcatcc 527
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aacattctaaatttgccacaaaaactttgatcagttcatcatcc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)