BAC Information

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BAC

Clone NameMSMg01-071M02
Chromosome5 (Build37)
Map Location 121,295,383 - 121,295,701
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b
Downstream geneOas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071M02.T7 (MSMg01no071_m02.b1)MSMg01-071M02.TJ (MSMg01no071_m02.g1)
ACCAG295463AG295464
length722724
length of high quality
(start - end)
109 (111 - 219)319 (75 - 393)
definitionCHROMAT_FILE: MSMg01no071_m02.b1 PHD_FILE: MSMg01no071_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:16 2005CHROMAT_FILE: MSMg01no071_m02.g1 PHD_FILE: MSMg01no071_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAA
TTCGCATCCATATGATCTTGTATAAAAGCCAGCAGGAGCTGGGGAGGGGG
CAGGGCTGGGGAGCTGGGGACAGTGAATGGAGACAGACTGGTCCCAGGAG
CCGATCGGCCACTGGCCTATAGAATCAATGAGCAGTTTTCTGACTTGGCT
CTGTGTCTGCCATCAAGGGAATGTAAATGGACACACTGAGTGACTGTGGG
TGGGCTGTAAACTCATCGGTGAATTCGGCTCCCAAGCCCCTCTCACTCCC
TGCTTTTCAACCTCATTACTCATCTGCATGTGAGCCTGGAGATTTCTTCA
TATTGAAGGCTGTGCTGTGCTCCGTACGCTGTTTAAACAGCATCTCTGGA
CTCTATCTACCAGATGCTTATCGGTAATCCCCGCTGTTGATATGATCCAT
TCGCGGTTCCCTTATTTGACCTTCTGTTTCTGCGAGCATAGTCATTCTCC
TGGCTGAAATTATTTTCCCGTTGTCCCTTTTGCTTGAGGTTTCCATGAAC
CATAATATGTGATTGGGATCAGTGTGCTTGAAATCATAACCAGTTTTTTA
AGGGAAAGAATGGAAAAAAATACTGGGCATAATTAAACTTAATGCCCCGC
CCCACGCTTAAAATTTCTCAAATAGGTATTCCATAATTCCTTATTAGAGT
CCTCGTTGTTTTTATAACTAAA
TCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATGGGAAAGGCAGCTGCTGAACAGA
GCGGGCTGCTACTGCATTCATTCAGTAAAGCTGCTGCCAAAGAGTAGTCT
TAGACCTGAGAGTCGAGGAGAAAGACCACTCCCACAATTTCTGAGCAAAA
ATTTGACACAAGCTTGAATTAAATTGGGGCCAAGATGATGGAATCGGGCC
AGGACCATTCCAGGGCTCACAGGAATGGCCAGGAGCCACATTTTGCAGAA
GCTTATTAAAGACAACCCCACCAGGCTAAGTGTTTCCTACTAGGTCCAAT
CAGGGACACGCTTACCTCCTAAGATACCTCCTGCCTGCTAACCTCTCCCC
CCTCACCCGTGACCAAACACATCCTGTGCAGTTGATGCTCTTAATGTTTG
TTTTGTGAAATAAAATAACAGGTTTGNNTCCCCCCCNCCNNAAGCTAGCG
GGACATAGGGGGNCAAGGGGCCCCCNTTTGTATGGTGAGCGTCTGTATTG
GTTTTGACGATTTTATGGAAGATCAAACCCTCTCTACCCTCGGTGTGGTG
TCTCTACCCCGCCTCTGAAGCCGACTTCTTCTTGGAACTCTGGTTTTGTC
TTACTCGAGTGGACAGATGCGGAGGAATGGAGGGCGCATGGCCAGTATGG
GAGCCGCCCATAAAGCATTGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_m02.g1 MSMg01no071_m02.g1 CHROMAT_FILE:
MSMg01no071_m02.g1 PHD_FILE: MSMg01no071_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:16 2005
         (319 letters)



>mm_chr5_121295183_121295901
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgggaaaggcagctgctgaacagagcgggctgctactgcattcattcagtaaagctgc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tatgggaaaggcagctgctgaacagagcgggctgctactgcgttcattcagtaaagctgc 260

                                                                       
Query: 61  tgccaaagagtagtcttagacctgagagtcgaggagaaagaccactcccacaatttctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccaaagagtagtcttagacctgagagtcgaggagaaagaccactcccacaatttctga 320

                                                                       
Query: 121 gcaaaaatttgacacaagcttgaattaaattggggccaagatgatggaatcgggccagga 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaaaatttaacacaagcttgaattaaattggggccaagatgatggaatcgggccagga 380

                                                                       
Query: 181 ccattccagggctcacaggaatggccaggagccacattttgcagaagcttattaaagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ccattccagggctcacaggaatggccaggagccacattttgcagaggcttattaaagaca 440

                                                                       
Query: 241 accccaccaggctaagtgtttcctactaggtccaatcagggacacgcttacctcctaaga 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 accccaccaggctaagtgtttcctactaggtccaatcagggacaggcttacctcctaaga 500

                              
Query: 301 tacctcctgcctgctaacc 319
           |||||||||||||||||||
Sbjct: 501 tacctcctgcctgctaacc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)