Query= MSMg01no072_a20.b1 MSMg01no072_a20.b1 CHROMAT_FILE:
MSMg01no072_a20.b1 PHD_FILE: MSMg01no072_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:40 2005
(609 letters)
>mm_chr5_56543340_56544344
Length = 1005
Score = 1120 bits (579), Expect = 0.0
Identities = 600/609 (98%), Gaps = 4/609 (0%)
Strand = Plus / Plus
Query: 1 catagaaattcctggaatggaagaattgagttttctagtgcacatgtttttctttcttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagaaattcctggaatggaagaattgagttttctagtgcacatgtttttctttcttac 260
Query: 61 ttctgtttagagcaaaccaaaaccaaaccaatctccagtaaaaatcaggatgcactcata 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ttctgtttagagcaaaccaaaaccaaacaaatctccagtaaaaatcaggatgcactcata 320
Query: 121 tccttaggtgaaaacaatttcatcctaaaggcatagggtagggatgaggtggagtattgg 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttaggtgaaaataatttcatcctaaaggcatagggtagggatgaggtggagtattgg 380
Query: 181 tggtgaacattctctcccatagcatgcattatataaacacgtctcatggtttaatatttt 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtgaaaattctctcccatagcatgcattatataaacacgtctcatggtttaatatttt 440
Query: 241 ctgaagccttcgtacaaaagtcaggcggtttcttagcaaatagtagcagtgttatagtcg 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaagccttcgtacaaaagtcaggcagtttcttagcaaatagtagcagtgttatagtcg 500
Query: 301 ctaagtcacttctaactgagaagccaatttagagggaaatgggcatgcaagctgctaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaagtcacttctaactgagaagccaatttagagggaaatgggcatgcaagctgctaaca 560
Query: 361 gtagggcagaagcttcagaggtgtggaaggagagaggaagagaggaacagcaggtttcgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagggcagaagcttcagaggtgtggaaggagagaggaagagaggaacagcaggtttcgc 620
Query: 421 attaatttggtcgataaccttgacactaaagtgatgatggaaaactcataaggtgtgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaatttggtcgataaccttgacactaaagtgatgatggaaaactcataaggtgtgaat 680
Query: 481 gaaggtctccagccagcaagtgaggaagttacataatacatcacttataatgactccttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaggtctccagccagcaagtgaggaagttacataatacatcacttataatgactccttt 740
Query: 541 gactgtgtgtagagtgagtgtcccattcttaataacagtaaatctactggtattgtggag 600
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gactgtgtgtagagtg----tctcattcttaataacagtaaatctactggtattgtggag 796
Query: 601 tgaatggat 609
|||||||||
Sbjct: 797 tgaatggat 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1005
Length adjustment: 10
Effective length of query: 599
Effective length of database: 995
Effective search space: 596005
Effective search space used: 596005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_a20.g1 MSMg01no072_a20.g1 CHROMAT_FILE:
MSMg01no072_a20.g1 PHD_FILE: MSMg01no072_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:40 2005
(620 letters)
>mm_chr5_56751207_56752228
Length = 1022
Score = 1156 bits (598), Expect = 0.0
Identities = 616/622 (99%), Gaps = 2/622 (0%)
Strand = Plus / Minus
Query: 1 ctcctctaaaagaaaatgctagta-ttttttaacaaaaatgttatattttaataagatgc 59
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 822 ctcctctaaaagaaaatgctagtatttttttaacaaaaatggtatattttaataagatgc 763
Query: 60 actagtttgacgaagataaataggtcagtttaacaaataaaatcagaggaaagttttta- 118
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 actagtttgacaaagataaataggtcagtttaacaaataaaatcagaggaaagtttttat 703
Query: 119 ttttaagaaatcaaacactaatattttttctagagtaactcatttgaaagattaaaatat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttttaagaaatcaaacactaatattttttctagagtaactcatttgaaagattaaaatat 643
Query: 179 aaattaaggcaattctcataggactactgaagcacacactataacaattattgtgctaat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aaattaaggcaattctcataggactactgaagcacacactataacaattattgtgctaat 583
Query: 239 tggaattattatgatgtatctaacataaaaattatagtgtatctattggtaatatgtcaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggaattattatgatgtatctaacataaaaattatagtgtatctattggtaatatgtcaa 523
Query: 299 agatgttgaaattattctaataactgtaataatataaagcattataaattaatttcacac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agatgttgaaattattctaataactgtaataatataaagcattataaattaatttcacac 463
Query: 359 tcagtcttacattaaaacaatgttaaagatctttatggttgacttgtttgaatgattaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcagtcttacattaaaacaatgttaaagatctttatggttgacttgtttgaatgattaca 403
Query: 419 gtatgtaaaaatctgtctttaagcaggcactgtagttatagtttctcatttgtgttgctt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtatgtaaaaatctgtctttaagcaggcactgtagttatagtttctcatttgtgttgctt 343
Query: 479 ttgtactagaaaggtggtcactaattgcttttgttcatcaatctagtgcatggtttaaat 538
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 342 ttgtactagaaaggtggtcactaattgcttttgttcatcaatatagtgcatagtttaaat 283
Query: 539 gtaaagacactttacagtcctttgaatatgtttccacaattaaaataaaacatttgattt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtaaagacactttacagtcctttgaatatgtttccacaattaaaataaaacatttgattt 223
Query: 599 gctaatgggctgatagaaaaag 620
||||||||||||||||||||||
Sbjct: 222 gctaatgggctgatagaaaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space: 617320
Effective search space used: 617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
