BAC Information

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BAC

Clone NameMSMg01-072D13
Chromosome5 (Build37)
Map Location 143,945,630 - 144,074,682
singlet/doubletdoublet
Overlap gene4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik
Upstream geneC330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak
Downstream geneZdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072D13.T7 (MSMg01no072_d13.b1)MSMg01-072D13.TJ (MSMg01no072_d13.g1)
ACCAG295818AG295819
length708705
length of high quality
(start - end)		541 (45 - 585)519 (72 - 590)
definitionCHROMAT_FILE: MSMg01no072_d13.b1 PHD_FILE: MSMg01no072_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:53 2005CHROMAT_FILE: MSMg01no072_d13.g1 PHD_FILE: MSMg01no072_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,074,181 - 144,074,682)(143,945,630 - 143,946,146)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTATACCAGGCTGGCCTCTAACTCACAAAGATTTGCCATCC
TTGGCCTCCCCAGATTAAAGGTGTGTGACACCACACCCAGCCTTAAATTA
ATTTTTTGATAAACAAAACAAAAAGGCCTCATCTTCAGAATAAATGGAAA
ATCTATTTCTCAGGCAAAATGATTGGATTTTTAAAACAGTATGCGGAGGG
AAGGAGAGATGGCTTAGGAGTTAAGAGACTTGTTCACACAAAGGACCCAA
ATCCAGTTCTTAGAGCACCCATATCCTGCTCCCAAGTGCCTATAACTCCA
GCTCCCGGGAATCCCTTCCCCCTGTTCTCCTTGAATGCCTTTACGCACAT
GTATGGGTCTACTCAAACAGACACACGGGGCTACACACCATGAAAAGTAA
AATCTTAAGAAAAACAAGTTTAACTATGTAGCTTAGGCCAGCCTACAACC
TCCTAATCCTTTTGCCCCAGGCTTCCTAGTGCTGAGACCGAGCCTTGAGC
CACCACACCCAGCTGTAGCAAACTTTTTTTTTTGATTGCTTTGTTTTGCT
TTTTTGAGACAGGGTTTCTCTGAGTAGCCCTGGCTGTCCTGGAACTCGAG
ATCCGCCTGCCTCTGCCTCCCAAGTGCTGTGATCAAAGGCATGCGCCACC
TCTGCTGG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTATGAACAGACTTCCATGTTGCTTGCT
GCATAGACATAGGATGTTGTCCAGAAACTGGCAAAAGAACCTGAATGGAA
TAATGAGCCATGAACCAAGACAGCATCACAGACCAGAGGGAGGAAGGGGG
AAGAAGCTGGAACTCAGAATGAAGGGTTCCAGTGTGTGCCCTCACCTTGG
AGGGAGTGGAGGAAGGTGACACAGTGGTGCATCAGGAGAGCCAGGTTTCA
GCTGCAGCCGCCAATTATTACAGTGTGTTACAGTGTGTTTGGGGCCATAT
TCTGGTGTTTAGTTTCTTTAACTAAGGGAGGGGCTCAGAGAGTAATTAGT
CCCCTTGTCTCACACAGCAACTCCTCCTTACAAGGACTGGCATTGCCATG
ACTGTAAAATGTGATTTAAAACAATCAACTCTATGGTCATGAAGCAAGCC
AAGAGGGTGACACTTTGAGCTCTGTGTGCACCTGATGTGCGTATGTAACA
TATATATCAACATTCCATTCATTTTAGATAGTTCTCATCTGCGTATGAGT
GTGCAGGCACATGCCATGATGCCCGTGTGGTCAAGAGAACAACCTTTGGG
AGTAGTTTCTCTTGCTCCACTTGTGTCTGGGGTGTGTCTTGTACTGCTCC
AGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_d13.b1 MSMg01no072_d13.b1 CHROMAT_FILE:
MSMg01no072_d13.b1 PHD_FILE: MSMg01no072_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:53 2005
         (541 letters)



>mm_chr5_144074181_144075121
          Length = 941

 Score =  963 bits (498), Expect = 0.0
 Identities = 501/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtataccaggctggcctctaactcacaaagatttgccatccttggcct 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggaattcactctgtagaccaggctggcctctaactcacaaagatttgccatccttggcct 443

                                                                       
Query: 64  ccccagattaaaggtgtgtgacaccacacccagccttaaattaattttttgataaacaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccccagattaaaggtgtgtgacaccacacccagccttaaattaattttttgataaacaaa 383

                                                                       
Query: 124 acaaaaaggcctcatcttcagaataaatggaaaatctatttctcaggcaaaatgattgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acaaaaaggcctcatcttcagaataaatggaaaatctatttctcaggcaaaatgattgga 323

                                                                       
Query: 184 tttttaaaacagtatgcggagggaaggagagatggcttaggagttaagagacttgttcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttttaaaacagtatgcggagggaaggagagatggcttaggagttaagagacttgttcac 263

                                                                       
Query: 244 acaaaggacccaaatccagttcttagagcacccatatcctgctcccaagtgcctataact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acaaaggacccaaatccagttcttagagcacccatatcctgctcccaagtgcctataact 203

                                                                       
Query: 304 ccagctcccgggaatcccttccccctgttctccttgaatgcctttacgcacatgtatggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccagctcccgggaatcccttccccctgttctccttgaatgcctttacgcacatgtatggg 143

                                                                       
Query: 364 tctactcaaacagacacacggggctacacaccatgaaaagtaaaatcttaagaaaaacaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tctactcaaacagacacacggggctacacaccatgaaaagtaaaatcttaagaaaaacaa 83

                                                                       
Query: 424 gtttaactatgtagcttaggccagcctacaacctcctaatccttttgccccaggcttcct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  gtttaactatgtagcttaggccagcctacaacctcctaatccttttgccccaggcttcct 23

                                 
Query: 484 agtgctgagaccgagccttgag 505
           ||||||||||||||||||||||
Sbjct: 22  agtgctgagaccgagccttgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no072_d13.g1 MSMg01no072_d13.g1 CHROMAT_FILE:
MSMg01no072_d13.g1 PHD_FILE: MSMg01no072_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:53 2005
         (519 letters)



>mm_chr5_143945430_143946348
          Length = 919

 Score =  953 bits (493), Expect = 0.0
 Identities = 511/517 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatgaacagacttccatgttgcttgctgcatagacataggatgttgtccagaaactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatgaacagacttccatgttgcttgctgcatagacataggatgttgtccagaaactgg 260

                                                                       
Query: 61  caaaagaacctgaatggaataatgagccatgaaccaagacagcatcacagaccagaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagaacctgaatggaataatgagccatgaaccaagacagcatcacagaccagaggga 320

                                                                       
Query: 121 ggaagggggaagaagctggaactcagaatgaagggttccagtgtgtgccctcaccttgga 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ggaagggggaagaagctggaactcagaaagaagggttccagtgtgtgccctcaccttgga 380

                                                                       
Query: 181 gggagtggaggaaggtgacacagtggtgcatcaggagagccaggtttcagctgcagccgc 240
           |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 381 gggagtagaggaaggtgacacagtagtgcatcaggagagccaggtttcagctgcagccac 440

                                                                       
Query: 241 caattattacagtgtgttacagtgtgtttggggccatattctggtgtttagtttctttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattattacagtgtgttacagtgtgtttggggccatattctggtgtttagtttctttaa 500

                                                                       
Query: 301 ctaagggaggggctcagagagtaattagtccccttgtctcacacagcaactcctccttac 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaaggaggggctcagagagtaattagtccccttgtctcacacagcaactcctccttac 560

                                                                       
Query: 361 aaggactggcattgccatgactgtaaaatgtgatttaaaacaatcaactctatggtcatg 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggactgacattgccatgactgtaaaatgtgatttaaaacaatcaactctatggtcatg 620

                                                                       
Query: 421 aagcaagccaagagggtgacactttgagctctgtgtgcacctgatgtgcgtatgtaacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcaagccaagagggtgacactttgagctctgtgtgcacctgatgtgcgtatgtaacat 680

                                                
Query: 481 atatatcaacattccattcattttagatagttctcat 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatatcaacattccattcattttagatagttctcat 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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