BAC Information

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BAC

Clone NameMSMg01-072F01
Chromosome5 (Build37)
Map Location 47,957,705 - 47,958,213
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072F01.T7 (MSMg01no072_f01.b1)MSMg01-072F01.TJ (MSMg01no072_f01.g1)
ACCAG295888AG295889
length685691
length of high quality
(start - end)
513 (45 - 557)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no072_f01.b1 PHD_FILE: MSMg01no072_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:00 2005CHROMAT_FILE: MSMg01no072_f01.g1 PHD_FILE: MSMg01no072_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAAGAACTCGTAAGTATCCGTGTGATCCTAATCATGAAAGTTAG
TATCCTTTTTGTTCACTTTGCAGAGAAAAAAAAATGACCAGAATGCTTAC
TAGACTCTCATAAGGTCACACAAAACTTAGTAACTTAGTCTGGTTCACTT
ACCAAATGAGTAGATGTCATTTTGTATGGATAATGAAAACAAGTGAGAGC
CAATCCACTAACAGAGCAGCAAGCCTTCTCAAATTCGTCTTCATTTCTCA
GGAATAAAACACACACGGTATTGGAAAACTTCACTCCAGAGGATTTAGAA
CTAGAGATATTGTCACCACTTGGTGACAATTATTCCAGCTTCTTCGGCTC
CTTCAAGACGCTCAGTGGTTTTACTTACTCATTCATTCTTTCAAAAACAA
TTATTAGATGCACACTATCCATGAGACTGGATCAATCCAGATGCTCAAGT
ACAAGGCAGCCTCTTTTCTCACAGACTGTGTGATTTAGTTTTCAGAGACA
TAGCAGTATTGACCACAGATGTGGATTTCATTCAACTTATTTTTAAAAAA
CGATATGAATATTTTAAAAGGATATGGATCGACTTAAAGTTAAACTAATG
TAGTAATTAAAGAATTAAATTACTGGTTTGTGTAG
NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATTTAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGTAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGCACTTCTACTCTATGGAGTACTACTCAGCTATTAAAAAGAATGAC
TTTATGATATTCCTAGTTCATTGTACGGACCCGCAGGGCATCATCCTGAG
TGAGGTAACACATTTACAAATAAATTCTCACAATTATGCATTTCCTGATA
AATTGTATATTAGCCCCCTAATTTAGGCACCCCTTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_f01.b1 MSMg01no072_f01.b1 CHROMAT_FILE:
MSMg01no072_f01.b1 PHD_FILE: MSMg01no072_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:00 2005
         (513 letters)



>mm_chr5_47957501_47958413
          Length = 913

 Score =  953 bits (493), Expect = 0.0
 Identities = 505/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaaagaactcgtaagtatccgtgtgatcctaatcatgaaagttagtatccttt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaattcagaaagaactagtaagtatccgtgtgatcctaatcatgaaagttagtatccttt 654

                                                                       
Query: 65  ttgttcactttgcagagaaaaaaaaatgaccagaatgcttactagactctcataaggtca 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 653 ttgttcactttgcagagaaaaaaaaatgaccagaacgcttactagactctcataaggtca 594

                                                                       
Query: 125 cacaaaacttagtaacttagtctggttcacttaccaaatgagtagatgtcattttgtatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cacaaaacttagtaacttagtctggttcacttaccaaatgagtagatgtcattttgtatg 534

                                                                       
Query: 185 gataatgaaaacaagtgagagccaatccactaacagagcagcaagccttctcaaattcgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gataatgaaaacaagtgagagccaatccactaacagagcagcaagccttctcaaattcgt 474

                                                                       
Query: 245 cttcatttctcaggaataaaacacacacggtattggaaaacttcactccagaggatttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttcatttctcaggaataaaacacacacggtattggaaaacttcactccagaggatttag 414

                                                                       
Query: 305 aactagagatattgtcaccacttggtgacaattattccagcttcttcggctccttcaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aactagagatattgtcaccacttggtgacaattattccagcttcttcggctccttcaaga 354

                                                                       
Query: 365 cgctcagtggttttacttactcattcattctttcaaaaacaattattagatgcacactat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 353 cgctcagtggttttacttactcattcattctttcaaaaacaattattagatgcacactag 294

                                                                       
Query: 425 ccatgagactggatcaatccagatgctcaagtacaaggcagcctcttttctcacagactg 484
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 293 ccatgagactggatcaatccagatgctcaagtacaaggcagccttttttctcacagactg 234

                                        
Query: 485 tgtgatttagttttcagagacatagcagt 513
           |||||||||||||||||||||||||||||
Sbjct: 233 tgtgatttagttttcagagacatagcagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)