BAC Information

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BAC

Clone NameMSMg01-072F16
Chromosome5 (Build37)
Map Location 86,870,557 - 86,870,828
singlet/doubletsinglet
Overlap geneTmprss11a
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
Downstream gene9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072F16.T7 (MSMg01no072_f16.b1)MSMg01-072F16.TJ (MSMg01no072_f16.g1)
ACCAG295918AG295919
length740728
length of high quality
(start - end)
276 (38 - 313)454 (69 - 522)
definitionCHROMAT_FILE: MSMg01no072_f16.b1 PHD_FILE: MSMg01no072_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:03 2005CHROMAT_FILE: MSMg01no072_f16.g1 PHD_FILE: MSMg01no072_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTATACGACTCCTATATCCAGAAGATCCGCGGAATTCCAT
ACACGATCACCGGAATGGATAGGTCTTTCAAAAGGATTTGCATAAAAACA
GAATAGAGCAGATATGGTCTGTAACACAAGAGGAAAGTCTGAAGTATGCT
CACATAAAACAAAATGTCGTTTTTCAAGAAAGATTTCAAAAAAACAAACA
AAAATTCTCATAAAACAGAATGGTGATCTGAAGGGGAAGGGATATGTATG
TGTTTTATGATGATAAAGGACATTCACTATGGAGCAGATCATGTAGTTCC
ATACCTTGGTTGGTTAATTTACCTGTCACATAAATATGTAGTGCCACCCA
GTGAAGGCCTGCAACATGCCCCTGAGAATATTATGTCTGTTTATTTAAGT
CAATTATTTAACCCCATGTCTGTCCCTGGTGCACTTACATGTCTAGAAAC
TCAAACATAACTGACTCTTGAACATCTATTTCTTACTCAGTTTCTGGTAC
TCATGTTTGCCCAAACTTATGTTATTTTTTTTATTTTTTTTCATACTCCT
TTATCACTTCACGTACTTCCTCTTAATAGATAACACATCTACTATTGCTT
TATCCCCCCCTCTTCTTCGCACTAGATCCTATGTAATTTTGTAACACTCC
TACACCCTTTTATTCTCCTGTTCTCCTTTCCTCTTTCTTCTTTTCTCTCT
TTTCCTCGTTCCTTTTCTATTCCTCATCACTTGCTGTTCC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAGATTTTTATCATGAATGGGG
GTTGGATTTTGTCAAATGCTTTCTCAGCATCTAACGAGATGATCATGTGG
TTTTTGTGTTTGAGTTTGTTTATATAATGGATTACATTGACCGATTTTCA
TTAATTAAACCATCCCTGCATCCCTGGAATAAAACCTCCATGGTCAGGAT
GGATGATTGTTTTGATGCGTTCTTGGATGCGGTTAGCAAGAATTTTATTG
AGTATTTTTGCATCGATATTCATAAGGGAATTTGGTCTGAAGTTCTCTAT
CTTTTTGGATCCTTCTATGGTTTAGGTATCAGAGTAATTGTGGCTTCATA
GAATGAGTTGGTTAGAGTACTTTCTACTTCTATTTTGTGGAATAGTTTGT
GCATAACTGTAATTAGATCTTCTTTGAATGTCTGATAGAACTCTGCACTA
AACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACAATTAATGACTGC
TTCTATTTCTTTAGGGGATATGGGACTGTTTAGATCATTAACTTGATCCT
GGTTTAACTTTGATACCTGGTATCTGTCTGGAAAATTTGCCATTTCCTCC
AGGTTTTCCAGGTTTGTTGAAGATAGCCTTTTGTAAAACGAATTGATGGG
TTTTTTGATTCCTTCAGGGTTTGTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_f16.b1 MSMg01no072_f16.b1 CHROMAT_FILE:
MSMg01no072_f16.b1 PHD_FILE: MSMg01no072_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:03 2005
         (276 letters)



>mm_chr5_86870353_86871028
          Length = 676

 Score =  495 bits (256), Expect = e-144
 Identities = 268/272 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatacacgatcaccggaatggataggtctttcaaaaggatttgcataaaaacag 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatacacgatcagtggaatggataggtctttcaaaaggatttgcataaaaacag 264

                                                                       
Query: 65  aatagagcagatatggtctgtaacacaagaggaaagtctgaagtatgctcacataaaaca 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatggagcagatatggtctgtaacacaagaggaaagtctgaagtatgctcacataaaaca 324

                                                                       
Query: 125 aaatgtcgtttttcaagaaagatttcaaaaaaacaaacaaaaattctcataaaacagaat 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 aaatgtcgtttttcaagaaagatttcaacaaaacaaacaaaaattctcataaaacagaat 384

                                                                       
Query: 185 ggtgatctgaaggggaagggatatgtatgtgttttatgatgataaaggacattcactatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgatctgaaggggaagggatatgtatgtgttttatgatgataaaggacattcactatg 444

                                           
Query: 245 gagcagatcatgtagttccataccttggttgg 276
           ||||||||||||||||||||||||||||||||
Sbjct: 445 gagcagatcatgtagttccataccttggttgg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)