XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAGATCCGCGGAATTC
TCGGTTTAGTTCTATACCCCATTTTTTGATTGTTTTTTTTTTTATTTGTT
TGTTTGTTTGCTTTGTTTTATGGTGATTAAGTTCTTGAGTTCCTTATATA
TTTTTGATATTAGCCTTCTATTGGAAGTGGGGTTAGTGAAGATTTTTTTC
CCAATCTGTGGGATGCTGATTTGTCCTATTGACTATGCCCTTTGCCTTAT
AGAAGCTTTCCAGTTTTATGAGTTCTCATTTACCAATTCTTGATCTCACA
GTGTGAGCCATTGGAGTTCTGTTTAGGAAATCCTTCCTGACCACCAATGC
CAAATAATTCCATGCTCTTTCCCACTTTGTCTTCTATTAGATTTAGTGTA
TCTGGTTTTATGTTAAGGTCCTTGATCTACTTGGACTTGAGCTTTGTGCA
AGGTGATAAATATGGGTCTATTTTCATTTTTCTACATACAGACACCCACT
TAGACAAGCACCATTTATTGAAGATGCTTTCTTTTTTTTCATTGCATATT
TTTGGATTCTTTGTCAAAGATCAAGTGTCATAACTGTGTGGTTTTATTTC
TGTATCTTCAATTCTATTCCACTGATGAACCTGTCTGTCTCTGTATCATT
ACTATGCAGTTTTTATCACTATTTCTCTGTAGTATAACTTGTGGTCTGGG
ATGTT

GAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACATAGTAAAATGTATTTATTTTGTGCTGGTT
CTATGTAACAAAGATACTGAGCAGCGACCCATCATATGTCAAAACAAAAA
CAAAAAATCCAGACCCAAATAGAAATATTTTCAATTAAAAAAAACCTGAA
GAGATAAAAAAAATCAACTTAAAGTATAGCTAAAATTGATATTATATATA
CATCTCCATGATTGCTTTGTTAATTCAAGCCTATGGCACACAAAAGCTGA
AGAAACGTCAATACAACTTAAAGCAGCTTATGAAAATAGTTTGATTTGGA
GCAATCGTAAGTGTAGTTTTAAATAAGCTTTCCTGTTTCTGACAAATGAC
TCAAACAGAACTCTTTATATGTCATTTTCCTTAACTGCACTCTTATGTGT
TGCTGGGTTTAAGAATACGTCCCATCAAGGCTGAGCCAATTTCAGAGGAC
TGCTGTTTAAAGGCTTTTCCTTCTTGCAGACACAAAGGGGTAACTGCCTG
AGAAGTTTTTGTAGGGATCGATTGAGTTTTCTTTATCTTTCAAACAAGGC
TTTGTACTACGTGCGTTAGGGTGCTTCAGTTCTTGGAGAAGTTGCAGAAG
CTCTTGCCATTTCTTCTCAGGTTCCAACTGATTAAGCACTGGAAGGATTT
AAGCA

Query= MSMg01no072_i20.g1 MSMg01no072_i20.g1 CHROMAT_FILE:
MSMg01no072_i20.g1 PHD_FILE: MSMg01no072_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:20 2005
         (539 letters)



>mm_chr5_6624304_6625244
          Length = 941

 Score = 1023 bits (529), Expect = 0.0
 Identities = 538/541 (99%), Gaps = 2/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatagtaaaatgtatttattttgtgctggttctatgtaacaaagatactgagcagcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatagtaaaatgtatttattttgtgctggttctatgtaacaaagatactgagcagcga 260

                                                                       
Query: 61  cccatcatatgtcaaaacaaaaacaaaaaatccagacccaaatagaaatattttcaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatcatatgtcaaaacaaaaacaaaaaatccagacccaaatagaaatattttcaatta 320

                                                                       
Query: 121 aaaaaaa-cctgaagagataaaaaaaa-tcaacttaaagtatagctaaaattgatattat 178
           ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaacctgaagagataaaaaaaaatcaacttaaagtatagctaaaattgatattat 380

                                                                       
Query: 179 atatacatctccatgattgctttgttaattcaagcctatggcacacaaaagctgaagaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatacatctccatgattgctttgttaattcaagcctatggcacacaaaagctgaagaaa 440

                                                                       
Query: 239 cgtcaatacaacttaaagcagcttatgaaaatagtttgatttggagcaatcgtaagtgta 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtcaatacaacttaaagcagcttatgaaaatagtttgatttggagcaatcgtaagtgta 500

                                                                       
Query: 299 gttttaaataagctttcctgtttctgacaaatgactcaaacagaactctttatatgtcat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttttaaataagctttcctgtttctgacaaatgactcaaacagaactctttatatgtcat 560

                                                                       
Query: 359 tttccttaactgcactcttatgtgttgctgggtttaagaatacgtcccatcaaggctgag 418
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 tttccttaactgcactcttatgtgttgctgggtttaagaatacttcccatcaaggctgag 620

                                                                       
Query: 419 ccaatttcagaggactgctgtttaaaggcttttccttcttgcagacacaaaggggtaact 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaatttcagaggactgctgtttaaaggcttttccttcttgcagacacaaaggggtaact 680

                                                                       
Query: 479 gcctgagaagtttttgtagggatcgattgagttttctttatctttcaaacaaggctttgt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctgagaagtttttgtagggatcgattgagttttctttatctttcaaacaaggctttgt 740

            
Query: 539 a 539
           |
Sbjct: 741 a 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 941
Length adjustment: 10
Effective length of query: 529
Effective length of database: 931
Effective search space:   492499
Effective search space used:   492499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)