Query= MSMg01no072_j06.b1 MSMg01no072_j06.b1 CHROMAT_FILE:
MSMg01no072_j06.b1 PHD_FILE: MSMg01no072_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:22 2005
(340 letters)
>mm_chr5_36837411_36838148
Length = 738
Score = 611 bits (316), Expect = e-179
Identities = 330/336 (98%), Gaps = 4/336 (1%)
Strand = Plus / Minus
Query: 3 ggaattctatctctcccc-cgattttcaccttgtacagtaagtccctgcccttggacttg 61
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggaattctatctctccccaggattttcaccttgtacagtaagtccctgcccttggacttg 476
Query: 62 gcctgccgcatctgggacgtattctgtcgagatggagaggaatttctcttccgcacagct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gcctgccgcatctgggacgtattctgtcgagatggagaggaatttctcttccgcacagct 416
Query: 122 ctgggcatcctgaagctttttgaagatatcctgaccaggatggacttcatccacagtgcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctgggcatcctgaagctttttgaagatatcctgaccaggatggacttcatccacagtgcc 356
Query: 182 cagtttctgaccaggctgcctgaggacctgcccgcagatgaagtgtttgcagctatctcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cagtttctgaccaggctgcctgaggacctgcccgcagatgaagtgtttgcagctatctcc 296
Query: 242 acagtccagatgcaaagccggaacaagaaatgggcactggtaataagcgagtttgtagca 301
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 295 acagtccagatgcaaagccggaacaagaaatgggcacaggtaa---gcgagtttgtagca 239
Query: 302 cagcctgagactgaagcactgtgttgctcaaaatag 337
||||||||||||||||||||||||||||||||||||
Sbjct: 238 cagcctgagactgaagcactgtgttgctcaaaatag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 738
Length adjustment: 9
Effective length of query: 331
Effective length of database: 729
Effective search space: 241299
Effective search space used: 241299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_j06.g1 MSMg01no072_j06.g1 CHROMAT_FILE:
MSMg01no072_j06.g1 PHD_FILE: MSMg01no072_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:22 2005
(379 letters)
>mm_chr5_36732899_36733677
Length = 779
Score = 679 bits (351), Expect = 0.0
Identities = 372/379 (98%), Gaps = 2/379 (0%)
Strand = Plus / Plus
Query: 1 tacttccactcagcatctcaccaggcaaggtctttgcttcactgggctccacactgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tacttccactcagcatctcaccaggcaaggtctttgcttcactgggctccacactgcagc 200
Query: 61 cccagcagttaaccctgccaggtacacaagaaacgctcagcaaatattagctgagtccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagcagttaaccctgccaggtacacaagaaacgctcagcaaatattagctgagtccac 260
Query: 121 agctgctggggggtgggacctgcactgttgctagaaaagaaaaaacaaggaagtgatgtc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 agctgctggggggtgggacctgcactgttgctagaaaagaaagaacaaggaagtgatgtc 320
Query: 181 caaagacttggaaaaccacagagtggaagactgcattggcagcatgcttgtcaggcccca 240
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 caaggacttggaaaaccacagagtggaagactgcattggcagcatgctggtcaggcccca 380
Query: 241 caaatgctagccagactccacacatgctggctaggctccacccatgctggccaggctcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatgctagccagactccacacatgctggctaggctccacccatgctggccaggctcca 440
Query: 301 cccatgctgaccaggctccacccatgctgcgc-agggtccacccatgctggccaggctcc 359
||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 441 cccatgctggccaggctccacccatgctg-gccaggctccacccatgctggccaggctcc 499
Query: 360 acccatgctggccaggctc 378
|||||||||||||||||||
Sbjct: 500 acccatgctggccaggctc 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
