BAC Information

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BAC

Clone NameMSMg01-072N16
Chromosome5 (Build37)
Map Location 121,807,414 - 121,807,906
singlet/doubletsinglet
Overlap geneAU042671
Upstream geneLOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802
Downstream geneTrafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072N16.T7 (MSMg01no072_n16.b1)MSMg01-072N16.TJ (MSMg01no072_n16.g1)
ACCAG296294AG296295
length731753
length of high quality
(start - end)
496 (40 - 535)297 (67 - 363)
definitionCHROMAT_FILE: MSMg01no072_n16.b1 PHD_FILE: MSMg01no072_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:44 2005CHROMAT_FILE: MSMg01no072_n16.g1 PHD_FILE: MSMg01no072_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCAA
TGTGAGGTTCCCTGTGAAGCAGGTGGCATGTTGCCCAGCTCATCCATGTA
CTGGTCAACTGCTGCAGCCAGGTACCAACATGGCTCCCCTAGTTGGGCAA
CCCCATTCCACCATTTACTTACTCAGCTGTTAGGATAGACAGAGCAAGGT
GTGCTCACCAGGGATTCCCTACCAAGCTGTATTGTTACAGTTACACTAAG
CACCACCTACATGCCCACTCACAGGGAGAGCTCCTAACTGTGCTATACCT
TGTAGTGGAACTCTAGGCGATCAAGAGAATGACCTCAATGGACCCCTATA
GCATCAAGGGTGTGAAAACCTGAACAAGTCAGACTGCTGGCAATGTCTTC
AACAGGGGTGAAGACACCAACCTCTAAAGCATGTGGGGAGAGTCGGTTCC
TGAGCACAGCCACAGGGTCTCCTGTTTACTGCTGTAATCAACAGAACAGC
TATGTGGTCAGTATGCACATCCTTCTCCCACAAACCCAGAGCTTTGAGGT
GGGAAAGGCTGAGCTGCCCAGTGTCCAGAAGCCATGTGTGCAGGTGGCCA
CCAGCATCTTATGAGGGGAAAGGAGGGTGTAGCACCGCTCTCTTCACACT
GGATGTCAGCTCGCTCGCTCACTATGTTCTCATACATACAATTCCCCTTC
TCACTGGTGAGTTCTTTGTCAGCCCCACTTG
TGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGGAGACTGGGGTCTCTGTGTAGCCCTGGTTG
TCTGGAACTCACTCTATAGACTCGGATCCACCTACTTCTGACCCCATGTT
GGGATTAAAGGCATCACTACTCCACTTAGATAATTTTTTGGCGGGCGGGC
GGGGGGGGGGGTTTAAAGACAGGGTTTCTCTGGGTAGTCCTGGCTGTCCT
CGAACTCATAAATCAGCCTGCCTCTGCCTCCCAAGTGTTGGGATTAAAGG
TGTGTGCCACCACTGTTTGACTTGAGCAGAGAATTTTTTTATTATTTTTT
TTTATTTTTATTCCTTTGGGTTTTTGAGACAGGGTTTCTCTGTATAGCCT
TGTTTGTCCCGCAACTCACTCTGTATACTAGTTTGGTCTCGAACTCATAT
ATCTGCTTGCCTCTGCCTTCCTAGTGTTGTGTTTAATTGTGTTGTACTTT
CTTCTTCGCGTTGTGATTTTTTTTTATAATGTTCTATTTTGTAGTTTGTT
ATGTCATCAGTACTTCGGTCTTCGGTACTCTCCGCTACTAGCGTTTATTT
CACTTCTTTATTAATGGCTGCATCACCCCGTAGCTGTTTGCTTTTTTTAT
TTGATCCCCTTTCACTTCGTAATCTACATCTTCTTTATCTTGTTTCTCCC
ACGCTATTGTATTACTCTCCCCGACCCCCCAATATTTATTCCCTTATCTT
ACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_n16.b1 MSMg01no072_n16.b1 CHROMAT_FILE:
MSMg01no072_n16.b1 PHD_FILE: MSMg01no072_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:44 2005
         (496 letters)



>mm_chr5_121807211_121808106
          Length = 896

 Score =  915 bits (473), Expect = 0.0
 Identities = 488/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaatgtgaggttccctgtgaagcaggtggcatgttgcccagctcatccatgtact 63
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 696 gaattcaatgtgaggttgcctgtgaagcaggtggcatgttgcccagcttatccatgtact 637

                                                                       
Query: 64  ggtcaactgctgcagccaggtaccaacatggctcccctagttgggcaaccccattccacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggtcaactgctgcagccaggtaccaacatggctcccctagttgggcaaccccattccacc 577

                                                                       
Query: 124 atttacttactcagctgttaggatagacagagcaaggtgtgctcaccagggattccctac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atttacttactcagctgttaggatagacagagcaaggtgtgctcaccagggattccctac 517

                                                                       
Query: 184 caagctgtattgttacagttacactaagcaccacctacatgcccactcacagggagagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 caagctgtattgttacagttacactaagcaccacctacatgcccactcacagggagagct 457

                                                                       
Query: 244 cctaactgtgctataccttgtagtggaactctaggcgatcaagagaatgacctcaatgga 303
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 456 cctaactgtgctataccttgtagtggaactctaggcgaccaagagaatgacctcaatgga 397

                                                                       
Query: 304 cccctatagcatcaagggtgtgaaaacctgaacaagtcagactgctggcaatgtcttcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cccctatagcatcaagggtgtgaaaacctgaacaagtcagactgctggcaatgtcttcaa 337

                                                                       
Query: 364 caggggtgaagacaccaacctctaaagcatgtggggagagtcggttcctgagcacagcca 423
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 336 caggggtgaagacaccaacctctaaagcatatggggagagtcggttcctgagcacagcca 277

                                                                       
Query: 424 cagggtctcctgtttactgctgtaatcaacagaacagctatgtggtcagtatgcacatcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 cagggtctcctgtttactgctgtaatcaacagaacagctatgtggtcagtacgcacatcc 217

                        
Query: 484 ttctcccacaaac 496
           |||||||||||||
Sbjct: 216 ttctcccacaaac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)