BAC Information

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BAC

Clone NameMSMg01-072N20
Chromosome5 (Build37)
Map Location 21,020,893 - 21,021,291
singlet/doubletsinglet
Overlap geneFbxl13
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670
Downstream geneLOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072N20.T7 (MSMg01no072_n20.b1)MSMg01-072N20.TJ (MSMg01no072_n20.g1)
ACCAG296302AG296303
length713721
length of high quality
(start - end)
49 (480 - 528)403 (76 - 478)
definitionCHROMAT_FILE: MSMg01no072_n20.b1 PHD_FILE: MSMg01no072_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:45 2005CHROMAT_FILE: MSMg01no072_n20.g1 PHD_FILE: MSMg01no072_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATCTCAGGAAGCGTGCTGCCCAGTTCTTCATGACGGCCTGCCGTA
CAGACTATCTTGATGCTTCCGTTTCCCATCAGCAGTTGGTGGAACAGGCC
AGCGACAGAGCCCCTGAGCAGGTGCTGTTACTCGTTGGTGACCGTCATGT
TTGTCAGCACCCTCAGTCCGGCCAGCTGCACCGCAGAGTTCAGGGGGTCA
GCTAAGACGTCCTCACAGACTTGAGGTACGTATATCTGTATTGTGACAGA
GAACCACTGAGCAACTCTGGCTCTCCTGAAAAGTCTACCGAGTGGCTACT
TTTCTGCATGTAAAGGAGGGTTGACGGCTCTCGATGAATGAGTTCTTCAT
AAAAGATGGCACTTGTGTCTGGACCTCCAACTTTGGTGACCATTTTATTG
CCTTTGCTAATAACCTGGCATTGTGCTGAGAACCAAAGGCCTAAATTTAG
CTGAAGACTGCTCTTATGTACCGAGGTGCGTGCGAGTGCTTTTGTGTGTA
TGTGAGTGACTCCACACTACTATTAACCTACACTGGTGAAGGCCAATGTG
GCATGAGTCTCCAGATTGGAAAATTATTACTAAATCTGAATGCCATCTAC
CACTATAAAATACAATAGTACGGCCCTAATTTCAGGTCCCATCAATTATC
AACTAATTGCCCA
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCGAGACCTTGCCTCAGAACAGAA
AGTAAAAGGAGGGATGGGCTGTAGCTTGATGGGCGGTAGACAGCTTGCTT
GGCTTGTACTAGACCCAGACTTTACTCCCTGACACTGAAAATCTGAAAGG
AGGAAGAAAGGCTAGGGAAGGAAAAGAAAGAAAGGGAGGAGGAAAGAAGG
GAGGAAGAGGAGGAGGAAGAAAGAAAGGAAACATAATCACCCATTTGCAT
TGTATAGTATAGAAATGATCTAGATAGAGAAGTGATTTTCTACTGGACCC
CACATCCCAGGCACATGTATACAAACCCTGAATCCCAGGCACGTGTATAT
TTAGACCCTGCATCCCAGGCACATGTATATAGACCCCCATCCCAGGCACA
TGTATACAGACCCTGCATCCCAGGCACGTGTATTCAGCTCCCACATCCCA
GGCACATGTATACAGATCTACATCCCAGGCACATGTATACAGATCTACAT
CCCATGCACATGTATACAGATCTACATCCCAGGTACATGAATACAGACCC
TGCATCCCAGGCCCATGTATACAGCTCCCACATCCCAGGCACATGTATAC
AGATCTACATCTCCAGGAACATGGATACAGATCCTGCATCCCAGGCACAT
GGATACAGCTCCCACATCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_n20.g1 MSMg01no072_n20.g1 CHROMAT_FILE:
MSMg01no072_n20.g1 PHD_FILE: MSMg01no072_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:45 2005
         (403 letters)



>mm_chr5_21020831_21021631
          Length = 801

 Score =  592 bits (306), Expect = e-173
 Identities = 379/404 (93%), Gaps = 7/404 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcgagaccttgcctcagaacagaaagtaaaaggagggatgggctgtagcttgatgggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  agcgagaccttgcctcagaacagaaagtaaaaggagggatgggctgtagcttgatgggcg 122

                                                                       
Query: 61  gtagacagcttgcttggcttgtactagacccagactttactccctgacactgaaaatctg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 123 gtagacagcttgcttggcttgtaccagacccagactttactccctgacactgagaatctg 182

                                                                       
Query: 121 aaaggaggaagaaaggctagggaaggaaaagaaagaaagggaggaggaaagaagggagga 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 183 aaaggaggaaggaaggctagggaaggaaaagaaagaaagggaggaggaaagacgggagga 242

                                                                       
Query: 181 agaggaggaggaagaaagaaaggaaacataatcacccatttgcattgtatagtatagaaa 240
           |||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 243 agaggaggaggaagaaaggaaggaaccataatcacccatttgtattgtatagtatagaaa 302

                                                                       
Query: 241 tgatctagatagagaagtgattttctactggaccccacatcccaggcacatgtatacaaa 300
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct: 303 tgatctagatagagaagtgattttctactggaccccacatcccaagcacatgtatataga 362

                                                                       
Query: 301 ccctgaatcccaggcacgtgtatatttagaccctgcatcccaggcacatgtatatagac- 359
           |||  | |||||||||| ||||||   ||||||||||||||||||||||||||| || | 
Sbjct: 363 ccccca-tcccaggcacatgtatac--agaccctgcatcccaggcacatgtatacag-ct 418

                                                       
Query: 360 ccc-catcccaggcacatgtatacagaccctgcatcccaggcac 402
           ||| ||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 419 cccacatcccaggcacatgtatacagatc-tacattccaggcac 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 801
Length adjustment: 9
Effective length of query: 394
Effective length of database: 792
Effective search space:   312048
Effective search space used:   312048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)