BAC Information

Click to search

BAC

Clone NameMSMg01-073E02
Chromosome5 (Build37)
Map Location 83,230,892 - 83,231,289
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073E02.T7 (MSMg01no073_e02.b1)MSMg01-073E02.TJ (MSMg01no073_e02.g1)
ACCAG296599AG296600
length874701
length of high quality
(start - end)
---398 (78 - 475)
definitionCHROMAT_FILE: MSMg01no073_e02.b1 PHD_FILE: MSMg01no073_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:16 2005CHROMAT_FILE: MSMg01no073_e02.g1 PHD_FILE: MSMg01no073_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGAG
GATGCCGCGGAATTCACTCCGATGTCACATCCCATGTATCGGCGGTGTAA
TAACTGTGGGTGGATGGGCAAGCATACGAATCATGGAGCTCGTCACGCTA
TATTCAGCTCGCTCGACCACGTCACGTCTGTCGGCTTATAATAAGCATGC
GCCATTTCTCCCAGGTTTGGCCATCTCTCCTGCACAATCTTAGCTAATAA
AGACTCTTGCCGCGAGAAGATTACTGGTTCTGCTTGCATCTATTACTTGT
CCGTGCCGAGTCGTGCACGCTAATACTAAACTCGTCTACTCTACGCCACA
TCTCTATTTGGCTTTATTTCCATATTCTAGACATACTAAGCGAGTGACCT
AGAATTCTATTTCCCTTATAGTCTATTGCTCTTAACCCACTTATGTTCTC
ATATACCCATATCTCGGTCATATCACCCACTCGGTAAACTAGTTGTAATT
GCTTATTCATCATCTGACTGTCAATTTTCTTGATCTAACAACTCCGGTTT
ATTTATCTCTCCTCTCTTCTGTGATTAAGGATCTATTACTTCTCCTCTCA
TGTTAATATTATCTTTAATACAACGAATTTCCTGCTTATCTGTTATAATT
GCTTATTAATCACTTTATTTCCTTACTTTCCCCGCTACTTTTTCACTTAA
TGCTTCCTGATACCATTCCTTATTTACCCACATCTTGCCGACTTATATTT
TTTTTTTAACTATTTCATCACCTGCGCCCCCGCCCTCGACCGTAACTCCT
CTCTATCTCCTCCCATATCTTCATAACCGGCCTTACGCGCATTTTGCACT
TTTAATTCGCTTCTCTCTCCCCTC
TTTCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTATGAGGGTCTAAGGAGT
AATAACTTCTTATAAAGTAGGAAAATAATCTAAGTTTATCTGAACAAAAT
AAAACCCCTGATCTGAAAAGTCAAACAAGAAACTACTTGCAATAGAAAAG
TTTCCTTCCCACATGTAAAATTAAATCTGATAAAGTATCCCTAAAACAAA
AATATCTACGCAAGTAAAAATCTTTACAAAACAACTTTTCATTTTTACTA
GTAACATCAGTAGATTAGTGAAATAAAATAGTAAAATTTGGGTCTACAGG
ATCCTATGAAGAATTACATATTATATAAATTTAATAAAATTCAATTATCT
CTTAAAAGCCAAATATAGCATTTATGAGAAATATAGAAAAATGTAAAGAA
TGTTGCGTTAATAATACCAGGAATCAAGGAGAACAAAAATGAATGCTAAA
AGAGTAGTTATTTATTTTTTTATTACATATTTTCCTCAGTCACATTTCCA
ATGCTATCCCAAAAGTCCCCCATACCCTCTCCCCTACTTCCCTATCCACC
TATTCTTATTTTTTGGCCCTGGCGTTCCTCTGTACTGGGGCATATAAAGC
TTGCGTGTTCCAAGGTTCTCTCCAGTGATGGTCGTCTAGGCCATCTTTTG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_e02.g1 MSMg01no073_e02.g1 CHROMAT_FILE:
MSMg01no073_e02.g1 PHD_FILE: MSMg01no073_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:16 2005
         (398 letters)



>mm_chr5_83230800_83231597
          Length = 798

 Score =  700 bits (362), Expect = 0.0
 Identities = 389/398 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctattatgagggtctaaggagtaataacttcttataaagtaggaaaataatctaagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tctattatgagggtctaaggagtaataacttcttataaagtaggaaaataatctaagttt 431

                                                                       
Query: 61  atctgaacaaaataaaacccctgatctgaaaagtcaaacaagaaactacttgcaatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 430 atctgaacaaaataaaacccctgatctgaaaagtcaaacaagacactacttgcaatagaa 371

                                                                       
Query: 121 aagtttccttcccacatgtaaaattaaatctgataaagtatccctaaaacaaaaatatct 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagtttccttcccacatctaaaattaaatctgataaagtatccctaaaacaaaaatatct 311

                                                                       
Query: 181 acgcaagtaaaaatctttacaaaacaacttttcatttttactagtaacatcagtagatta 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagcaagtaaaaatctttacaaaacaacttttcatttttactagtaacatcagtagatta 251

                                                                       
Query: 241 gtgaaataaaatagtaaaatttgggtctacaggatcctatgaagaattacatattatata 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 250 gtgaaataaaatagtaaaatttgggtcttcaggatcctatgaagaattacatattatata 191

                                                                       
Query: 301 aatttaataaaattcaattatctcttaaaagccaaatatagcatttatgagaaatataga 360
           |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| 
Sbjct: 190 aatttaataaaattcaattatctcttaaaagccaaatagagtattaatgagaaatatagg 131

                                                 
Query: 361 aaaatgtaaagaatgttgcgttaataataccaggaatc 398
           |||||||||||||||||| |||||||||||||||||||
Sbjct: 130 aaaatgtaaagaatgttgtgttaataataccaggaatc 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)