BAC Information

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BAC

Clone NameMSMg01-073H01
Chromosome5 (Build37)
Map Location 107,234,991 - 107,235,261
singlet/doubletsinglet
Overlap geneEG666922
Upstream geneLrrc8d, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400
Downstream geneHfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073H01.T7 (MSMg01no073_h01.b1)MSMg01-073H01.TJ (MSMg01no073_h01.g1)
ACCAG296740AG296741
length701703
length of high quality
(start - end)
376 (40 - 415)271 (77 - 347)
definitionCHROMAT_FILE: MSMg01no073_h01.b1 PHD_FILE: MSMg01no073_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:30 2005CHROMAT_FILE: MSMg01no073_h01.g1 PHD_FILE: MSMg01no073_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGATCCGCGGAATTC
ATTGCTATCCTAAAAAAAGACTTGCTGTATTTTCTAAGAGTCAAAGGGCT
GACTCATGGTATAATCAAAAGGGAACCTGGGGTGGACACTTGAATTGATA
TGGAAATAAAAGACTGGGATTTGGTCTGCAAGAGCTGAGCTGTCTAGAGA
TCTCTGGAGAGTGGAACACAAGGCTGTCAGTATGTACCCACCATTGACTT
TAAGTTGTTCTTTCGACACTCCCAAGCACCCTTTCCTCAGAACCCCTCTC
CAAGTTGAAGCTGGTCCTTGACACTGATATATTGAGCATATGAAGAGAAA
AGGAGGTCTCAGTTTTTGATTCAGTGTCAGACATACATCTGACATGGTGG
CACATACCTGTCAGCATTTGGACTCAGAGGCAGAAGGCTCTAGAGTTCGA
GGCAAGCTTGTGCTATGCAGTGAGACCACTTGAATGAGGACACAAAGATC
GGAAGGGAAGGGAAGGCAATAAGGGAAAGGTAGGATAGGGTAATTCAGTG
TGCAACCCTTTCTTTTCCTTTTCTACCTAAATCCCTTCTTTTCTTCCTTT
ACTTCCCTTTTGCTTTTTCTTTCTCTTTCTTTTCTCCCCCCTTCTTTTTT
TTCCCTTTTTTTTTTTTCCTCCCTCTTCTTCTTTCTTTCCCTTTCCTTCC
G
TTCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCCTAATTGTTGCACAGTTC
TTCAGTTGAAACTGCCAGTGATAATGTTTACTCTCCAGGTCCAAGTTCTG
CTTGGTACATCACGGATGGCCCCTTCTGCCTCTGGCGTCTCCAGCGTCTT
CTGTCTGGACTCCTCCTGGTGTACTAGCCTCTGGCCACATGTCTTTCACT
GGGACCAAGCACACTCAGTTGTCTCTCACACTCGAGCAAAAGTCTCTGGC
CCCAGGGGTGAGCACAGTCCCGTATTATCCTGAAGTGCATGGCTATGTTG
GCGCACATGGATAATAGTGGCTAACTCTAGTATTGTTTTGCCTGTGTGTG
ATGTGTATAGCCCTCATAAGGAGTATCCTGCCCTCCTCTCCCCCTGCCCT
CCCATCCCTTCCTCCAGGTCTCCTCTCTTTCTCCCTTCATACTTAATTCA
AGCGCTGCTAACATACATTCCAGGCATGCTTTCAGTCTGGCTTGACGCTT
TGCCCTCCTCTGCTCTGTGTCCCATGTGCCGAATTTACACTCCCGTGTGC
ACCCTCTCTGCACCTTATCTTCGCCTGAGCTCTCATGGATTGATACCCTG
TCGGAATCAGCAGTCCTTCTTCCCTACCATGCATTACCTGCTCCGTCTGC
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_h01.g1 MSMg01no073_h01.g1 CHROMAT_FILE:
MSMg01no073_h01.g1 PHD_FILE: MSMg01no073_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:30 2005
         (271 letters)



>mm_chr5_107234791_107235461
          Length = 671

 Score =  501 bits (259), Expect = e-146
 Identities = 268/271 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctcctaattgttgcacagttcttcagttgaaactgccagtgataatgtttactctcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cttctcctaattgttgcacagttcttcagttgaaactgccagtgataacgtttactctcc 260

                                                                       
Query: 61  aggtccaagttctgcttggtacatcacggatggccccttctgcctctggcgtctccagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtccaagttctgcttggtacatcacggatggccccttctgcctctggcgtctccagcg 320

                                                                       
Query: 121 tcttctgtctggactcctcctggtgtactagcctctggccacatgtctttcactgggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctgtctggactcctcctggtgtactagcctctggccacatgtctttcactgggacc 380

                                                                       
Query: 181 aagcacactcagttgtctctcacactcgagcaaaagtctctggccccaggggtgagcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcacactcagttgtctctcacactcgagcaaaagtctctggccccaggggtgagcaca 440

                                          
Query: 241 gtcccgtattatcctgaagtgcatggctatg 271
           |||||||||| ||||||||||||| ||||||
Sbjct: 441 gtcccgtattttcctgaagtgcatagctatg 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)