Query= MSMg01no073_o17.b1 MSMg01no073_o17.b1 CHROMAT_FILE:
MSMg01no073_o17.b1 PHD_FILE: MSMg01no073_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:08 2005
(238 letters)
>mm_chr5_59007200_59007837
Length = 638
Score = 391 bits (202), Expect = e-113
Identities = 229/238 (96%)
Strand = Plus / Minus
Query: 1 gctaaataagtgactaatcaaatgtatattaaatatatgctcacgctagcatgcatcaaa 60
||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||||
Sbjct: 438 gctaaataagtgactaatcaaatgtatattaaatataggcttaagctagcatgcctcaaa 379
Query: 61 agcttaatgatcaattgtaattttccccaaatatctgttagttcttaaataaaagaattc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 378 agcttaatgatcaattgtaattttccccaaatatctgttagttcttaaatcaaagaattc 319
Query: 121 atactattgatgtttctatttaatgctatgttgtagctgtgcatcccaagttgtttatta 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 318 atactattgatgtttcgatttaatgctatgttgtagctgtgcatcccaagttgtgaaata 259
Query: 181 aaatgagggaaggaccctaggtcatacagtcaatcacattattatgacagggctttat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaatgagggaaggaccctaggtcatacagtcaatcacattattatgacagggctttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no073_o17.g1 MSMg01no073_o17.g1 CHROMAT_FILE:
MSMg01no073_o17.g1 PHD_FILE: MSMg01no073_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:08 2005
(597 letters)
>mm_chr5_58912888_58913883
Length = 996
Score = 1112 bits (575), Expect = 0.0
Identities = 590/595 (99%), Gaps = 1/595 (0%)
Strand = Plus / Plus
Query: 1 ccagcaacactttgagttcaagagtcctgacccctccagctggaaggtaaaattcagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagcaacactttgagttcaagagtcctgacccctccagctggaaggtaaaattcagctc 260
Query: 61 ttccactaaacagctaaatgtgtggcaatttgctgaacttcaatagaaacgtcttatgat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccactaaatagctaaatgtgtggcaatttgctgaacttcaatagaaacgtcttatgat 320
Query: 121 cgcatactaattgaagaagattggattaccagagagaaaggtagttgttattatgttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcatactaattgaagaagattggattaccagagagaaaggtagttgttattatgttctg 380
Query: 181 ggaaatctctattagtcataagattattcaaatcacaagtcaaataaataagaacactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaatctctattagtcataagattattcaaatcacaagtcaaataaataagaacactca 440
Query: 241 gacgtatgtgccttctaaaaaaatcataagataacatcacacaatgaaatatttttcaaa 300
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacgtatgtgccacc-aaaaaaatcataagataacatcacacaatgaaatatttttcaaa 499
Query: 301 ctgtgtttgtttggatttttcagttctgcatgcaaactgaagaaagtttttcttttttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgtgtttgtttggatttttcagttctgcatgcaaactgaagaaagtttttcttttttgt 559
Query: 361 aaatcaactcatttattttcaccttgtcaagattaccttaagggaaaacttgatccattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatcaactcatttattttcaccttgtcaagattaccttaagggaaaacttgatccattt 619
Query: 421 ttcaaagtgaaaaattatgatcaacttttgagaagctgaatataattatagaaacaaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcaaagtgaaaaattatgatcaacttttgagaagctgaatataattatagaaacaaaac 679
Query: 481 aaatatataaatagtgcactgcaggtggtcatgcaggcaatgtgcctttcatttagggct 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 680 aaatatataaatagtgcactgcaggtggtcatgcaggcaatgtgcctttcatttagtgct 739
Query: 541 taagacggccaaagacattttcccaccttggtgtctttcttcttggttttgagtg 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taagacggccaaagacattttcccaccttggtgtctttcttcttggttttgagtg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
