BAC Information

Click to search

BAC

Clone NameMSMg01-074A06
Chromosome5 (Build37)
Map Location 44,152,595 - 44,297,004
singlet/doubletdoublet
Overlap geneFbxl5, Bst1, Cd38
Upstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik
Downstream geneEG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074A06.T7 (MSMg01no074_a06.b1)MSMg01-074A06.TJ (MSMg01no074_a06.g1)
ACCAG297170AG297171
length699697
length of high quality
(start - end)
254 (73 - 326)265 (77 - 341)
definitionCHROMAT_FILE: MSMg01no074_a06.b1 PHD_FILE: MSMg01no074_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:15 2005CHROMAT_FILE: MSMg01no074_a06.g1 PHD_FILE: MSMg01no074_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,152,595 - 44,152,848)(44,296,740 - 44,297,004)
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGCCCTTACCATTAAAGAAAAAAAATTTTCCTACAATCCCA
ATTTAATAAAAAGCAAACACACTGTACCTAAGCCTAAAATTTGTATTACT
TTTCAGGATTCTACCTTTACTATACTTACCTAAACTCCTAACCTTAATGT
ACTGCACAATAAAGTAGCTTAATATAGTAAAGATTTGTTTAAAATAAAAT
TAAATATAGTGATTAAAAGAAAGCTATGTGAAAAGAGTAATTACTAACTA
TTTTATTGACTTTGCGCATTTCATAAATACCTCAAGTTCTTCCTTTACTT
GTACAATATGTGTATTTTATTACTCCCTTCTCACAACATTTCTTATTCCA
CTATACCTCTTATTCTTAATTCATTCTTTTACCTAGTCCCCTTCCCTGTT
TAGGTATGCTTCGCTTACTAAAAAAAATCCTATAGTTACACATTCTACTG
CCTCCTTAGACAAGCATACGATTGAAGCTTACTAGACTAATATCTGCCCC
ACTAATTTATTTTTCCAAATTCCTAAAACTATACCCCAACTTCCCAACTA
TGTCGACCCCCTTTCCCTCCTGGAATTAACAATCACCTGCACCTCCTCCC
CCACCCTATACCCCCTTTCCCTTACCAGCCCCACCTTAATTTTACCACT
TTTCTATGCTAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAATGCAGCCATGGCAATTTGCA
TGAATGAAAGCACTCACTTGGTATCATGTTCTGTAGATGCTACATCTTAT
TTAGCAGAAGTAAGGTGGACAATTTAGGGGAACACTGTAGAAAGGGAAGC
CCAGGTAAGAGGCAGTGATCCTGAGGTTCTAGAAAGGCATAAAGAGGGAG
GGGGTGTGGTGCTTGAATAAAAGAACATGGTTGAACAAGGAGTTTTATTT
CTTCATGCAATCAACTTTCAGCTGTGAGGTCTGCTAAGCACTGGAGGTCA
CCATGTGAACGGAGTTTTGTTCCCCCTCCTCTGGAGACAGACCTCTGGGA
CGTGGGTCTCCCTTCCACCACCATAGTGAAAAATACTTACTAACATTTCC
TTGTTACTGTCGACTTGGAATAGTTTTTATTCCGTCCCGTCCACGAGCTT
TGTGAGTTCTATGAGCTTGGATTCCTATGTGCTTTCTACAACTTTCAGTG
CTCTTTTACTCGTGTCCGTACCTGGCATGTTTTACTCTTTATTATTCCTA
GGATGAAAAGTATGATCTGTTTACCATAGATTTTTCGCCCCGCTCCCCCC
CCTTACATCCACAACGTGTTGTCCTCCCTATCACCAACTTCTCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_a06.b1 MSMg01no074_a06.b1 CHROMAT_FILE:
MSMg01no074_a06.b1 PHD_FILE: MSMg01no074_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:15 2005
         (254 letters)



>mm_chr5_44152395_44153048
          Length = 654

 Score =  453 bits (234), Expect = e-132
 Identities = 249/254 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaaaaaaaattttcctacaatcccaatttaataaaaagcaaacacactgtacctaag 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 201 aaagaaaagaaattttcctacaatcccaatttaataaaaagcaaacacactgtaagtaag 260

                                                                       
Query: 61  cctaaaatttgtattacttttcaggattctacctttactatacttacctaaactcctaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaaaatttgtattacttttcaggattctacctttactatacttacctaaactcctaac 320

                                                                       
Query: 121 cttaatgtactgcacaataaagtagcttaatatagtaaagatttgtttaaaataaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaatgtactgcacaataaagtagcttaatatagtaaagatttgtttaaaataaaatta 380

                                                                       
Query: 181 aatatagtgattaaaagaaagctatgtgaaaagagtaattactaactattttattgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatagtgattaaaagaaagctatgtgaaaagagtaattactaactattttattgactt 440

                         
Query: 241 tgcgcatttcataa 254
           || | |||||||||
Sbjct: 441 tgtgtatttcataa 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_a06.g1 MSMg01no074_a06.g1 CHROMAT_FILE:
MSMg01no074_a06.g1 PHD_FILE: MSMg01no074_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:15 2005
         (265 letters)



>mm_chr5_44296540_44297204
          Length = 665

 Score =  474 bits (245), Expect = e-138
 Identities = 260/265 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatgcagccatggcaatttgcatgaatgaaagcactcacttggtatcatgttctgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttaatgcagccatggcaatttgcatgaatgaaagcactcacttggtatcatgttctgtag 406

                                                                       
Query: 61  atgctacatcttatttagcagaagtaaggtggacaatttaggggaacactgtagaaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgctacatcttatttagcagaagtaaggtggacaatttaggggaacactgtagaaaggg 346

                                                                       
Query: 121 aagcccaggtaagaggcagtgatcctgaggttctagaaaggcataaagagggagggggtg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||
Sbjct: 345 aagcccaggtaagaggcagtgatcctgaggctctagaaaggcataaagaaggagggagtg 286

                                                                       
Query: 181 tggtgcttgaataaaagaacatggttgaacaaggagttttatttcttcatgcaatcaact 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 285 tggtgcttgaataaaagaacatggttgaacaaggagttttatttcttcatgcaaccaact 226

                                    
Query: 241 ttcagctgtgaggtctgctaagcac 265
           |||||||| ||||||||||||||||
Sbjct: 225 ttcagctgggaggtctgctaagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)