BAC Information

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BAC

Clone NameMSMg01-074A11
Chromosome5 (Build37)
Map Location 14,334,600 - 14,334,833
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074A11.T7 (MSMg01no074_a11.b1)MSMg01-074A11.TJ (MSMg01no074_a11.g1)
ACCAG297180AG297181
length704704
length of high quality
(start - end)
310 (43 - 352)231 (127 - 357)
definitionCHROMAT_FILE: MSMg01no074_a11.b1 PHD_FILE: MSMg01no074_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:16 2005CHROMAT_FILE: MSMg01no074_a11.g1 PHD_FILE: MSMg01no074_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCTCCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTT
GAGTCCACTTTCTTGACCTCTTTATATATATTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCTTCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTTTTTTTTTTCCCCCGTCTCCGGCTTTATGTGAAGCTCTTTGATCCAC
TTAGATTTGACATCCTTAAAGAGAAAAATGCCCCACATTTGAGCCATTAT
AGGAGGCCAATTAAGCATTCCCAGACAGCTGTTGCCAGTTTGTATAAGCC
CACTATTTTCTGATAGTACCATACTGTTACTTCCCAGCTCATAAGAGTTC
CCCCATCCCCTTTTCTTTGTGCCACTCCACCCTGTTGTTTGATTTATGAC
CATTGTCGCTAATGGATGTTCTCCCCTTGTTACTTTCCCCCGTCCCCCCT
CATTGTTTCCTTTCCTTGTTTTATGCCTGCACACATCTCTTTTCCCCTTT
TCCT
TTCATATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTCTGGAAAAAAATCCAATAAGCA
AATTGTCGGGAGCATTGTGCCCTTGAGTAGCTTACCTCAGGGTTTCCTTT
TAAATGTATAAAATCTGAATCCATCACTGTGCTTTAGGTCTGACATTCTG
CATTTCTGACTGACTCCCCGATGCTGCTAAGGTCTGGTCTTCAGAGCCAA
GTGAATCTAGATAATGATGTTCCAATTATGTAAATATCAAAGGAGCAAGC
ACTCCTTACACAAGTAAACTTCAAACACGAACACATGACCTAAAAATGTT
CTCTTGATTTTTATTAACCTACCGAATTTTCAATCTCACCTATATTTTCT
TCTTATGAAAAAGACCATAACAAAAATAATAGTTAATTCTGATTCAATCT
TTACGATGCATCTAATAGGTTTATGATGCTGATTTAAAAGGCTTACATTT
GCTGGACATTTAATCTTTCTTTACAAAATCCCTGGAGTACTTACGGAACA
GATCTATTAAAATACCTTCCTAAGAATACCATAATAATTTTCGCCATGTA
AGTATACATTACATATTTTTTCCTTGACGCTGCATTGCAAATTTCTTTCC
GTATTGTCATAAGACACCTTATTACTTGAAAATATGCGCCCCAACTTCTT
TCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_a11.g1 MSMg01no074_a11.g1 CHROMAT_FILE:
MSMg01no074_a11.g1 PHD_FILE: MSMg01no074_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:16 2005
         (231 letters)



>mm_chr5_14334400_14335033
          Length = 634

 Score =  414 bits (214), Expect = e-120
 Identities = 228/234 (97%), Gaps = 3/234 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagcttacctcagggttt---ccttttaaatgtataaaatctgaatccatcactgtgct 57
           ||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagcttgcctcagggttttttccttttaaatgtataaaatctgaatccatcactgtgct 260

                                                                       
Query: 58  ttaggtctgacattctgcatttctgactgactccccgatgctgctaaggtctggtcttca 117
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggtctggcattctgcctttctgactgactccccgatgctgctaaggtctggtcttca 320

                                                                       
Query: 118 gagccaagtgaatctagataatgatgttccaattatgtaaatatcaaaggagcaagcact 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccaagtgaatctagataatgatgttccaattatgtaaatatcaaaggagcaagcact 380

                                                                 
Query: 178 ccttacacaagtaaacttcaaacacgaacacatgacctaaaaatgttctcttga 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttacacaagtaaacttcaaacacgaacacatgacctaaaaatgttctcttga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 634
Length adjustment: 9
Effective length of query: 222
Effective length of database: 625
Effective search space:   138750
Effective search space used:   138750
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)