Query= MSMg01no074_l01.b1 MSMg01no074_l01.b1 CHROMAT_FILE:
MSMg01no074_l01.b1 PHD_FILE: MSMg01no074_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:08 2005
(314 letters)
>mm_chr5_89502371_89503084
Length = 714
Score = 576 bits (298), Expect = e-169
Identities = 307/310 (99%)
Strand = Plus / Plus
Query: 5 gaattcatattatggctatgttaatatagttcaatctaaggtttagatgagctctgtaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatattatggctatgttaatatagttcaatctaaggtttagatgagctctgtaag 264
Query: 65 aatgttttttgacaatatttattttaagctgtggctttaaagtgaatttttaaaaactca 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgttttttgagaatatttattttaagctgtggctttaaagtgaatttttaaaaactca 324
Query: 125 gttttcttcagtgtgtgtgtacaagggagaggtatgcatacagtgtgcacgtggaggtca 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 gttttcttcagtgtgtgtgtacaagggagaggtgtgcatacagtgtgcacgtggaggtca 384
Query: 185 gaggacaactttgtggggttggttttctccttccttccacacttgtatgggtgctgagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggacaactttgtggggttggttttctccttccttccacacttgtatgggtgctgagca 444
Query: 245 ctgaactcaggtttcaaggctcatgtagcctttagccactgagacagcccacaaaccttt 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 ctgaactcaggtttcaaggctcatgtagcctttagccactgagacagcccacaagccttt 504
Query: 305 acattgatct 314
||||||||||
Sbjct: 505 acattgatct 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_l01.g1 MSMg01no074_l01.g1 CHROMAT_FILE:
MSMg01no074_l01.g1 PHD_FILE: MSMg01no074_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:08 2005
(284 letters)
>mm_chr5_89617398_89618079
Length = 682
Score = 509 bits (263), Expect = e-148
Identities = 279/285 (97%), Gaps = 4/285 (1%)
Strand = Plus / Minus
Query: 1 aattcaagttagttgcaa-tttttttgtcatctatctctgagagctgacatatttgtagt 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aattcaagttagttgcaattttttttgtcatctatctctgagagctgacatatttgtagt 423
Query: 60 gcatataaaaatgcataactggattgtatttataactaaatgtctgccattctttgtgaa 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcgtataaaaatgcataactggattgtatttataactaaatgtctgccattctttgtgaa 363
Query: 120 ataaatatgaaaaaaaatgttagagaaaagcaaatttgactttcaaaatgactttcctag 179
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ataaatatg--aaaaaatgttagagaaaagcaaatttgactttcaaaatgactttcctag 305
Query: 180 atataaaatatcaaaaaggactgggaaaaaattccgatatgttcagtgacagaaaaatca 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 304 atataaaatatcaaaaaggactgggaaaaaa-tccgatatgttcagtgacagaaaaatca 246
Query: 240 tatttttaatgaacttcaacgatattttgatattttgaactatac 284
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 245 tatttttaatgaacttcaatgatattttgatattttgaactatac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 682
Length adjustment: 9
Effective length of query: 275
Effective length of database: 673
Effective search space: 185075
Effective search space used: 185075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
