BAC Information

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BAC

Clone NameMSMg01-074O13
Chromosome5 (Build37)
Map Location 143,715,194 - 143,870,759
singlet/doubletdoublet
Overlap geneFscn1, 2810055G22Rik, LOC667809
Upstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneOlfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074O13.T7 (MSMg01no074_o13.b1)MSMg01-074O13.TJ (MSMg01no074_o13.g1)
ACCAG297851AG297852
length699701
length of high quality
(start - end)
186 (123 - 308)232 (126 - 357)
definitionCHROMAT_FILE: MSMg01no074_o13.b1 PHD_FILE: MSMg01no074_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:26 2005CHROMAT_FILE: MSMg01no074_o13.g1 PHD_FILE: MSMg01no074_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,715,194 - 143,715,379)(143,870,528 - 143,870,759)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGAGCCTCCCATACAGCTTTCCAAACCCATGTTTTGTAAGAGCCACCA
GGCCTGAAAACTCTGGGCCCTGTCCCGTTTGTTGTGTCTAGGTCTCAGTT
TCCTGGAAGGCAGAGAATGCGTAGGTCCGTTGTTAGTGGAGACAGCAGTG
GTGGTAACAGCCTGGTCTACCCTCTTGGTCAGAGGGAGGCAGGCGGAGAG
TAACTCAGGGCCTGGGGGCAACACCCAGCTGGGCCTGGGGCTAGTGGGGG
CTCAGCCAGGCTGGATGTGGGTCCTCCTACTTCCTAAGCTCTGATGGGCA
TGTGTTTCTTGTGGTACCAGCCTGCCCTGAGGGGCCCTCAGAGCAGGTGA
CCACAGAGCCACCCCGAGGATATTCATGGCCTCTGGTTCACGAGGCTGCC
CCTTTATTGATGGCTTGAACCACAGAAAGTTGTGTGGTCTGTAGGGAAGC
TAGTCTCTGAGCTGTCTGGTCAGCTCATGCAGTGTGCGTGTGCGCGCTTC
GTGCTTGCCTTCTTTTTTTCCCCCCCCCCCCCTTTTCTTTCTCTCGTTCC
TTCCCTCCCCCTTCCTTTTTCCTCCTTTCTTTTTCCCTCCTCCCCCTTCC
TTTTTTCTCTTCCTTTTTTCCCCCTTCCCCCTCTCTTTCCCCTTTTCCC
TCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCCTGAGACGAATGCAGTTAAAGTT
TGGTCTGACAAGGGACCTACACCTTGCTAGAGAGTGAGGAAAGAACTATC
AGGTGACACTACTTGGGTCAGCAAAAGCCTGATGAGCCGTGATTTTTGTA
CTATGGTAAGGACTTGGGGACTGTCATGGTGACATGTAATTTAAAAAACA
GCCAGACATGATGGTACATGCCTTTAACCCCAGCAGAGTCCAGTGTAGTC
TACATAGTAAGACCTTGTCTGTAAAACAAAACAAAAACAAAACAACCCTT
AGTGCTGTATGATGAGGTCAAAGTATGGAGCCTAGAAGGCAGAACTTGAG
CTAAAAGAACAAAGTGCCACAAGCTCCTAGACAATTGATTTGTAAGATCT
TTGAGGATTACGGCTGTAGCTCATGAGTATGACACAGCACCTGCCAGGCC
CTGGGTTCAATTCCAGCACTGTACCCCACTCAAAAACAAATCACAGGTGG
GTGTGTTCACTTACCTGCTTGCATTTCAGAATCTATTTTCTAATGCCTAA
GAAAAATTTTACCATTTTATGTCTACTTTTTCTAACACCGTTTCTTGCAG
TGTAGGCCTGTCTCAAACTCGCAATGAAACTTAGGACGACTGTGACAAGT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_o13.b1 MSMg01no074_o13.b1 CHROMAT_FILE:
MSMg01no074_o13.b1 PHD_FILE: MSMg01no074_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:26 2005
         (186 letters)



>mm_chr5_143714994_143715579
          Length = 586

 Score =  352 bits (182), Expect = e-102
 Identities = 185/186 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccgtttgttgtgtctaggtctcagtttcctggaaggcagagaatgcgtaggtccgttg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccgtttgttgtgtctaggcctcagtttcctggaaggcagagaatgcgtaggtccgttg 260

                                                                       
Query: 61  ttagtggagacagcagtggtggtaacagcctggtctaccctcttggtcagagggaggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtggagacagcagtggtggtaacagcctggtctaccctcttggtcagagggaggcag 320

                                                                       
Query: 121 gcggagagtaactcagggcctgggggcaacacccagctgggcctggggctagtgggggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcggagagtaactcagggcctgggggcaacacccagctgggcctggggctagtgggggct 380

                 
Query: 181 cagcca 186
           ||||||
Sbjct: 381 cagcca 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_o13.g1 MSMg01no074_o13.g1 CHROMAT_FILE:
MSMg01no074_o13.g1 PHD_FILE: MSMg01no074_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:26 2005
         (232 letters)



>mm_chr5_143870436_143871067
          Length = 632

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctagagagtgaggaaagaactatcaggtgacactacttgggtcagcaaaagcctgatga 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 gctagagagtgaggaaagaactatcaggtgacgctacttgggtcagcaaaagcctgatga 265

                                                                       
Query: 61  gccgtgatttttgtactatggtaaggacttggggactgtcatggtgacatgtaatttaaa 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctgtgatttttgtactatggtaaggacttggggactgtcatggtgacatgtaatttaaa 205

                                                                       
Query: 121 aaacagccagacatgatggtacatgcctttaaccccagcagagtccagtgtagtctacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaacagccagacatgatggtacatgcctttaaccccagcagagtccagtgtagtctacat 145

                                                               
Query: 181 agtaagaccttgtctgtaaaacaaaacaaaaacaaaacaacccttagtgctg 232
           |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 144 agtaagaccttgtctggaaaacaaaacaaaaacaaaacaacccttagtgctg 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)