BAC Information

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BAC

Clone NameMSMg01-075O05
Chromosome5 (Build37)
Map Location 50,248,690 - 50,249,145
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnip4, LOC100041668, LOC100041659, EG433885
Downstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075O05.T7 (MSMg01no075_o05.b1)MSMg01-075O05.TJ (MSMg01no075_o05.g1)
ACCAG298597AG298598
length703703
length of high quality
(start - end)
456 (80 - 535)491 (77 - 567)
definitionCHROMAT_FILE: MSMg01no075_o05.b1 PHD_FILE: MSMg01no075_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:40 2005CHROMAT_FILE: MSMg01no075_o05.g1 PHD_FILE: MSMg01no075_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACACC
CGCGGAATCTTGAACCTTATCCGCAACAAGCCTATGTCTTCTCACTGAAT
CTTAGAACACTTCTTATGGCAAAGGTGATCTGTATAAGCTATGTATTATC
AGCGAGGGTGGAATCTCCAGCATTCATGTTAGATATAGCAAAAATGGATA
ATAAACTAGAGAAGATAACCTTGGGTAAACTCAGAATTATCAAGATAATA
AATAAAGATAAATATATTAAAATAGAATTTCTGATGCACAAGTTCAGAAT
AAAGGTTTATTTATGTAGCCTACCCTCTTTTGTGATGGTGGCCCTTCTAG
AGGTCTGTGACATTTCAGGTGTTCCCACAGTCTCCTTTTTCTGTATACAG
TGTGTACATGGTTCCTCTGTCCCTATCATATCACTGCACATTATGTACAG
GGGAGAGAAGGAGTGGTCTTTTCAGTTCATAGGTTGCTGCAAGGTGAGGA
GTCATTCTCAGATTCCAAGGAGCAATTTTCTTGGAATCCTGAATTTCTAG
CTAGCTTCCATGCCGGTTGGGCCTCTGGCTCGCCACCTTGTGGAAGGTAT
GAGCATAAGGTAGACATAGAAGAGCGAAGTATGTATGCATTTGATGACTT
TTATGTAGAGATCGATGATACCTGTAGCTATGATAAGTATAGATGTAACA
CAC
NTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGTTGGCTCCTATTCTTGTTT
TCTAAGACAATGCCAAATGTCAGGCTTTTATGGCTTCTTTCTATAAAATA
GTAACTGTGGTGATTTGAATGAGATGTTCACAATGCAATAGTCTCAGACT
CTTGCATACTTAGACCCCAACAGATGGTGATGGGGGGTGCTTCTTGGAGG
AATAAGGTATAGCCTTATGGCTCTGGAGGCAGGAATTCAAGTTAAAAGAC
TACTTCCCTGTTTTATGTTCTTGTTTGCAGTTCATAGTTTGACTTGTGAA
CACCCAGCTGTTCCTGCCATCCATGACTGCTGCCTGCTGTCATCATTCCT
TTCCATGATAGACTCTAACTCTCTGAAAGCATAAGCCCAAATAAACTTTC
TGTGGATTGAATGAGAATGGTCTGTGTAGGCTCATAGATTTGAATATTTG
GTCATTAGCAAGTACCACTATTTGAAAAGGAGGAGTGGTCTTGTTGGAGG
GACTATATCCCTGAGGATGCACTTTAGGTTTCAAAAATCTCCTTCCTAGC
CCCAAATCTCCTTTTTTTTTTTGCTGTCTGCCAATCCAGATGTATAATGC
TCAACCACTTTTTTCATCATCCTGTCTGCCTTGCATAGACTCCACGCTTT
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_o05.b1 MSMg01no075_o05.b1 CHROMAT_FILE:
MSMg01no075_o05.b1 PHD_FILE: MSMg01no075_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:40 2005
         (456 letters)



>mm_chr5_50248295_50249150
          Length = 856

 Score =  828 bits (428), Expect = 0.0
 Identities = 449/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctatgtcttctcactgaatcttagaacacttcttatggcaaaggtgatctgtataagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gcctatgtcttctcactgaatcttagaacacttcttatggcaaaggtgatctgtataagc 792

                                                                       
Query: 61  tatgtattatcagcgagggtggaatctccagcattcatgttagatatagcaaaaatggat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tatgtattatcagcgagggttgaatctccagcattcatgttagatatagcaaaaatggat 732

                                                                       
Query: 121 aataaactagagaagataaccttgggtaaactcagaattatcaagataataaataaagat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 731 aataaactagagaagataaccttgggtaaactcagaattatcaagataatgaataaagat 672

                                                                       
Query: 181 aaatatattaaaatagaatttctgatgcacaagttcagaataaaggtttatttatgtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaatatattaaaatagaatttctgatgcacaagttcagaataaaggtttatttatgtagc 612

                                                                       
Query: 241 ctaccctcttttgtgatggtggcccttctagaggtctgtgacatttcaggtgttcccaca 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctaccctcagttgtgatggtggcccttctagaggtctgtgacatttcaggtgttcccaca 552

                                                                       
Query: 301 gtctcctttttctgtatacagtgtgtacatggttcctctgtccctatcatatcactgcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtctcctttttctgtatacagtgtgtacatggttcctctgtccctatcatatcactgcac 492

                                                                       
Query: 361 attatgtacaggggagagaaggagtggtcttttcagttcataggttgctgcaaggtgagg 420
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 491 attatgtacaggggagagaaggagtggtcttttcagtttataagttgctgcaaggtgagg 432

                                               
Query: 421 agtcattctcagattccaaggagcaattttcttgga 456
           |||||||||||||||| |||||||||||||||||||
Sbjct: 431 agtcattctcagattcaaaggagcaattttcttgga 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)