BAC Information

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BAC

Clone NameMSMg01-076A13
Chromosome5 (Build37)
Map Location 128,234,595 - 128,234,844
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040327, Tmem132c, Slc15a4, Glt1d1
Downstream geneTmem132d, Fzd10, LOC100040398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076A13.T7 (MSMg01no076_a13.b1)MSMg01-076A13.TJ (MSMg01no076_a13.g1)
ACCAG298706AG298707
length935784
length of high quality
(start - end)
---253 (127 - 379)
definitionCHROMAT_FILE: MSMg01no076_a13.b1 PHD_FILE: MSMg01no076_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:52 2005CHROMAT_FILE: MSMg01no076_a13.g1 PHD_FILE: MSMg01no076_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCATCCACCACCGACACCAGCGCCCTCAGACTCGCTTCTNACGNTCG
NNNTGAGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTCTGATCTCCGTCCGGTTTGGTGAGCAGGCCATG
CTCTGGTTGTGCAGGCTCCCTTCAAACATGGCACAAGCACCCAGACGCTG
CACTGCTTCGCGCTGCATGCGATCCCCACACTTTAAATGCCCTGTATCAG
CCCACGGAGATTGCGCCTAGGAGATTACGCGTGCGCGGTGCGCCGGTCGA
CTGGGAAACGGGGCCAGCGCGCGGCGACCGCCGCAACGGCTCGCGGCGGG
GCGGGCGCGATAGAGAGCGCCTGTGGACGGGAAGGCCACGAGGACGACAG
ACTATGTGAACGATTGCAAGCGAGTATAGGCGTGGGAGTGAAGAGAGCAG
GTGATGTGACGACGGGCGCACAAGAGAAGCTAGCGGAGTCAAGGACGCGG
TGGGTTGAGTCGAGCGGGTAGGATGCGGTGTGGGCAAATTAAGGGCGGAT
GTCGAAGGTGTCATCGCGACGACAGGTTGCGGCGGCGCACGCGATATCCC
CGCTGGAGGAGTAGCGTGGACGGGAAGGACGAAGTGCGCGGGGGCGACGG
TCCGCGGCTCGTGTTATTGTAGTGCGGCGGAATGGATGCGCCGGGCCTGT
GACATGGCGAAGGTGACCGCAGTGGACGGAGGCGGAGGCGAGACGGGTTC
TGGGGGATAATGTGTTGGGGAACGTGAACGGTGGGTATGCGGGGCCCGGT
GTCGCGCCGTCGCATCGGTGATGGTGCGGCTAGGTGGCGTATGATGATGG
NTAAATGTGGATTGTGTGAGGGCTGGGTGGACGGTGCGCAGGTGTCGACA
AATCAGACGGGTGTCGATGGCGAACACATGATGGG
NGGCGCCCCCCCCGCCCCCCCCGGCGCCGGCCCCATACCCTTTCTTTANN
NCTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATGAATCCATCCATTCCCCAGA
TTGAACTTTGGTGGAATCACACCTCAGTGTGTCATTGGAATCTTAGGAAG
ATCAGGAGACATGAGGGAGGATTTTTTTTCAATCTCCCCCAGGAAAGGCA
TTTTTAATAACGCCCACACAGAGAGATAGTGGCTGAGGTACATATACATG
TATACACAAATATATACACAGACCTAACAAGTGAGAAGGGACATATACAT
GCATACATGCATGCATACATACATACTCTCACACACATTCATACTTACAC
ACACATAGTCTTCACCATGAATCAAAAGTATCTGTGGCCTAACACATCTC
TCCTAAATACTGCGTCACCTCATTCCTATACATGGTAACAGCTTCCCTGT
GTCTTCATGGCTTAGAGTAGACTTCTGTCTTCACTTTGAAGAACAGAAGA
TGGGTATGCCTCTTCTCAGCCCTACCCCATTTCACAGGACTGCTTAGGCT
CTCCCGACAGGATCTCTCCCTGGCCCTGTTCTCATTGGAAGCTTAAGAGT
TCTGCCTGGACCTGCCTTGACACGCCTGTTTTCTCTAACCTGTGCCAAGA
CAACTGGCTTTTAAACTTTTCTTTTCAGAATCTTTAAATAAAGTTTGGGT
GAATTGAATGTGTATTATAAAAAACCTGTGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_a13.g1 MSMg01no076_a13.g1 CHROMAT_FILE:
MSMg01no076_a13.g1 PHD_FILE: MSMg01no076_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:52 2005
         (253 letters)



>mm_chr5_128234427_128235079
          Length = 653

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgaatccatccattccccagattgaactttggtggaatcacacctcagtgtgtcatt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 418 taatgaatccatccattccccaggttgaactttggtggaatcacacctcagtgtgtcatt 359

                                                                       
Query: 61  ggaatcttaggaagatcaggagacatgagggaggattttttttcaatctcccccaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaatcttaggaagatcaggagacatgagggaggattttttttcaatctcccccaggaaa 299

                                                                       
Query: 121 ggcatttttaataacgcccacacagagagatagtggctgaggtacatatacatgtataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggcatttttaataacgcccacacagagagatagtggctgaggtacatatacatgtataca 239

                                                                       
Query: 181 caaatatatacacagacctaacaagtgagaagggacatatacatgcatacatgcatgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 238 caaatatatacacagacctaacaagtgagaagggacatatacatgcacacatgcatgcat 179

                     
Query: 241 acatacatac 250
           ||||||||||
Sbjct: 178 acatacatac 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)