BAC Information

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BAC

Clone NameMSMg01-076C20
Chromosome5 (Build37)
Map Location 78,217,684 - 78,218,204
singlet/doubletsinglet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076C20.T7 (MSMg01no076_c20.b1)MSMg01-076C20.TJ (MSMg01no076_c20.g1)
ACCAG298816AG298817
length735726
length of high quality
(start - end)		---521 (74 - 594)
definitionCHROMAT_FILE: MSMg01no076_c20.b1 PHD_FILE: MSMg01no076_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:04 2005CHROMAT_FILE: MSMg01no076_c20.g1 PHD_FILE: MSMg01no076_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCGGAACCNGCCCGGAAN
NCNGCNGNGTTTACGGNCACCCGGAGGCCNNNNNCACNANNCCGAANNGN
GGAACCAAACNAACAGAATAACCCACAGAGAAAACACGAACGGNANACAC
AGNGGAGNNNNACCCAGCCAAAGGGAAGGAAACNAACGCCCCGGGANAAA
AAACCCCGAACGGCAGACAACCCNACNGAGNGAAANAAGCCACCCACACA
AAAATATTTGCGNACNGCATGCNGACANNCANGCCAGGCGNCNAAGCNGC
AGGAGGAAGGAAGAGGGAATTTTTTAATTGGGAGGNGCNGGAGGCACGGG
ACCGAAGGNGGGGAACCGCCCCCCCCACGAANAAGAGACGGNGGNGGGAA
GGNGAANANGACCCAAGCACAAAGGCAGGCAGACACCGACAGGCAAACCC
CACANAGGGCAACGAAAACCCGCNCCAGGCGCCAAANAAACCAGCGAANA
AACGAACCNCAACGCNAACNNCACAAAAGAGGCAGCANACCCCACNCCNN
CAGGGCAGCACCCGAGAGACCAGGGACNAGGCAACGCGAGGGCCCGAACG
CACACCAGACCCCNAAAACCCCAACACACAACGACACGAAAAGACCGGAC
CGGCAGCAGCACACAATTTTTTTTTTGTGCAAACGCCCCCCTCGCCCACA
ACCCGCTTCAATATACGAAAAACTCCCAACATTCC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCGGGTGTGAGTGAATTTGTCTTTGTG
ATTTGGTGCACAGCTGGCCACCTCTATTTGGCGCTGTGGCAAGGTCGGTC
CTTGTCACATTGTGACATTGCCCTTAGGTAAATGTTATTGTGAGAGACTT
ATGGAAATGGAACTGAAGAACTAGGCTTTCTACCACAATAAGCTGATGTG
GGCTCCTTTCTGGAAGAAGCCATGGCTGGTTCTGTTCTCTCTCCTGTGCA
CCATCTGAATCTGTCGTTATTCCACCACTAGCCTAATGGTGCCTTTCTAA
AGTGTTTTATTGCACATTTGATGAATTGTCTGCTGTCTGTGAGTTTAGAT
TTTTCTATAGTGTTGCCATACGATAGAACTTGGAATTGAGACCTGTTTTG
CTAACTCACCAGTTATAGCAATAGTTAATAATAAAACTGCATGTCCATTT
CACCCACAGAGGATCTTAACAATAAACCTACTACTCATGAACTGTTAACC
TATCCCGTTGAAGATGCATGTTTGGTGAGGGGGTGTCAGTTGAGATGAGC
TTGTGTTGCCCTCCCACAGCGCAGAATAATTGCTCCTTCCTTATGTTCAC
ACTAACAGCCTCTCCTAGCCTCCCCAGTGTCCTAAAGACTTGTTTCAAAT
GAAACAGTTTTACTCTTCTGATGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_c20.g1 MSMg01no076_c20.g1 CHROMAT_FILE:
MSMg01no076_c20.g1 PHD_FILE: MSMg01no076_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:04 2005
         (521 letters)



>mm_chr5_78217484_78218404
          Length = 921

 Score =  899 bits (465), Expect = 0.0
 Identities = 507/521 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgggtgtgagtgaatttgtctttgtgatttggtgcacagctggccacctctatttggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgggtgtgagtgaatttgtctttgtgatttggtgcacagctggccacctctatttggcg 260

                                                                       
Query: 61  ctgtggcaaggtcggtccttgtcacattgtgacattgcccttaggtaaatgttattgtga 120
           ||||||||||||||||||||||  |||||||||||||||||||||| ||||| ||| |||
Sbjct: 261 ctgtggcaaggtcggtccttgtggcattgtgacattgcccttaggtgaatgtgattttga 320

                                                                       
Query: 121 gagacttatggaaatggaactgaagaactaggctttctaccacaataagctgatgtgggc 180
           | || ||||||||||||||||||||||||||||  ||||||||| ||||||| |||||||
Sbjct: 321 gggagttatggaaatggaactgaagaactaggcgctctaccacactaagctggtgtgggc 380

                                                                       
Query: 181 tcctttctggaagaagccatggctggttctgttctctctcctgtgcaccatctgaatctg 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tcctttctggaagaagccatggctggttctattctctctcctgtgcaccatctgaatctg 440

                                                                       
Query: 241 tcgttattccaccactagcctaatggtgcctttctaaagtgttttattgcacatttgatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgttattccaccactagcctaatggtgcctttctaaagtgttttattgcacatttgatg 500

                                                                       
Query: 301 aattgtctgctgtctgtgagtttagatttttctatagtgttgccatacgatagaacttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aattgtctgctgtctgtgagtttagatttttctatagtgttgccataggatagaacttgg 560

                                                                       
Query: 361 aattgagacctgttttgctaactcaccagttatagcaatagttaataataaaactgcatg 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 aattgagacctgttttgctaactcaccagttacagcaatagttaataataaaactgcatg 620

                                                                       
Query: 421 tccatttcacccacagaggatcttaacaataaacctactactcatgaactgttaacctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccatttcacccacagaggatcttaacaataaacctactactcatgaactgttaacctat 680

                                                    
Query: 481 cccgttgaagatgcatgtttggtgagggggtgtcagttgag 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccgttgaagatgcatgtttggtgagggggtgtcagttgag 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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