BAC Information

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BAC

Clone NameMSMg01-076H19
Chromosome5 (Build37)
Map Location 7,647,654 - 7,648,067
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076H19.T7 (MSMg01no076_h19.b1)MSMg01-076H19.TJ (MSMg01no076_h19.g1)
ACCAG299053AG299054
length708783
length of high quality
(start - end)
505 (39 - 543)414 (133 - 546)
definitionCHROMAT_FILE: MSMg01no076_h19.b1 PHD_FILE: MSMg01no076_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:28 2005CHROMAT_FILE: MSMg01no076_h19.g1 PHD_FILE: MSMg01no076_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGCGGCGCTATACGACTCCTATTTCAAGAAAGCCGCGGAATTCCTT
ACTCTTCCCAAATTTCTCCCTATGCCCTTACTTTTATGTTTTTCTTGAGT
TCAGATCTGTCTAACAACAGTTTCCCCAATTTCTTTATCCAAGCACTTAT
ACATCATTCAGAATACATGACCACATGGTAAAAGCTATACCACAAGTTTA
CACATAAGTTCAAATCATAAATTGAATAAGAAGTTAACAACAGAGAATGT
TTACATGCATATCCACTTTGAGTAATTATCTGACTAAACATTCATCATCT
GTTACAAACTCAAGATGTTCATAAAAAGTTAAAAACCATAACTTCTATAG
CTAAGTTATTAGTGAAGTTTTATATAGATAGATCCAGTAAATATTTTATT
TTCTGTCCTTTCACTTATAGTAAATTCTTATTTCCCTTTTATGACCTTTG
GTTAATTGTTTTACAATTTCTTGGAATGGGCTCTAAGTTGTAAGTGCCTG
CTAGCTATCTCAGAAGCAATTAACTAGCGATGCTTGAAGACTGGTTGAGT
TAATACAGTTTTGACCTCATAAAGGACTTACTAGCACTCCTATTATAAAA
GAGCTCATTAATTACCAGTATAACTTTTGGAATTCCTATAGTATCATCCT
TAAGTAATTATAATATCTCATCAGCATCTCTACAAGAAATTAAATCTTCG
TTGCTCTG
TTTTTTTNCCCTNNNNNNNTTTTTCNTTCCTTTTCCCTTTTCCTTCTATT
ACCATTTCCCGATGAAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAATATATTTCTTA
TAAATAATTTAAATTTGCTGATACTATGATGCTTTCTCCAAAGCAAATAC
CATATGATATTAAAACATACTATATAAAGTGGAGATTTATTTATAATTTT
AAAGAAGTAATATATTTTAATATATAAAGAGAAGTGTCTTTATATATTAT
AAACAATGACTTTGACCAAATGAAAATAACTGGTATGTTTAGCTTCAGTC
AAAGAAATGTTTATGAATTAACATTCTTCTGACCTCAGCTGCAATAACAC
ATAAGCATAAAAGATTTGACTGATTCATTATTCTTAACGCTGTTAACTGA
ATTGCGTCCCTCTAACTTTGCTTTTTTAAACATTTTTTATCAGATATTTT
CTTTATTTACATTTCACACGTTATCGCCTTTTCTGGTTTCCCCTCTGAAA
CCTTTCTACCCCTTCTCTCCTCCCCTTGAACATCAATCCACCCACTCTCA
GTTTCATGGCCCTGGCATTCCCCCTACCCCGGGCCATACAGCCTTTCCAG
CACCAAGGGCCTCTGCTCCCCCCTGATGACCCACTAGGCTCTCTTTCCGC
TTCATATGCCACTGGCATCCTTGAAATTCCCCTTGCCATATCCTTTGCTT
GGCGGTTTTAGTCCCCTGTGAACCCCGAGAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_h19.g1 MSMg01no076_h19.g1 CHROMAT_FILE:
MSMg01no076_h19.g1 PHD_FILE: MSMg01no076_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:28 2005
         (414 letters)



>mm_chr5_7647374_7648187
          Length = 814

 Score =  700 bits (362), Expect = 0.0
 Identities = 401/414 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaatatatttcttataaataatttaaatttgctgatactatgatgctttctccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 attgcaatatatttcttataaataatttaaatttgctgatactatgatgctttctccaaa 635

                                                                       
Query: 61  gcaaataccatatgatattaaaacatactatataaagtggagatttatttataattttaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gcaaataccatatgatattaagacatactatataaagtggagatttatttataattttaa 575

                                                                       
Query: 121 agaagtaatatattttaatatataaagagaagtgtctttatatattataaacaatgactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agaagtaatatattttaatatataaagagaagtgtctttatatattataaacaatgactt 515

                                                                       
Query: 181 tgaccaaatgaaaataactggtatgtttagcttcagtcaaagaaatgtttatgaattaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgaccaaatgaaaataactggtatgtttagcttcagtcaaagaaatgtttatgaattaac 455

                                                                       
Query: 241 attcttctgacctcagctgcaataacacataagcataaaagatttgactgattcattatt 300
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 454 attcttctgacctcagttgcaataacacatacgcataaaagatttgactgattcattatt 395

                                                                       
Query: 301 cttaacgctgttaactgaattgcgtccctctaactttgcttttttaaacattttttatca 360
           |||||  |||| |||||||||| ||||||||||||||| ||||||||| ||||||||| |
Sbjct: 394 cttaatactgtcaactgaattgtgtccctctaactttgtttttttaaatattttttatta 335

                                                                 
Query: 361 gatattttctttatttacatttcacacgttatcgccttttctggtttcccctct 414
           |||||||||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct: 334 gatattttctttatttacatttcaaatgttatcgcctttcctggtttcccctct 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)