BAC Information

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BAC

Clone NameMSMg01-076P03
Chromosome5 (Build37)
Map Location 41,613,256 - 41,613,534
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076P03.T7 (MSMg01no076_p03.b1)MSMg01-076P03.TJ (MSMg01no076_p03.g1)
ACCAG299400AG299401
length689752
length of high quality
(start - end)
545 (49 - 593)278 (134 - 411)
definitionCHROMAT_FILE: MSMg01no076_p03.b1 PHD_FILE: MSMg01no076_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:06 2005CHROMAT_FILE: MSMg01no076_p03.g1 PHD_FILE: MSMg01no076_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAATTCTTCAAATAATTCATTTAATTTCATTGAGGTCTTT
AATTTCTTTCTTTACTACTTCTTTAACCCAGTGGTCATTTAATAGAGTTG
TTTTGTTTCCATGAGATTGTAGGCTTTTGGCTGTTTCTGTTGTTGTTGAA
GTTCAGATTTACTCCATGATGGTTTGACAGGATACAAGGGGTTATTTCAA
TCTTTTTTAATCTGTTGAGGCTTGCTTTGTGACTGAGTATATAGTCAATT
TTGGAGAAGGTTCTATGAGATACTGAGAAGAAGGCATGTGTGGGTGAAAT
GTTCTCTAGTTATCTGTTAGGTCCATCTGAATTATTAATGACTTGTACAT
TGGGTAAGAGTGGGGCATTAATATCTGCCACTATTACTGTGCAATGTTCA
ATATGTGGTTTAAGCTTTAGTAATGTTTCTTTTATGAATGTGGTTGCCCT
TGCATTTGGAGCACAGATGGTCAGAATTGAGTTGCCATCTTGGTGGATTT
TTCCGTTGGTCAGTATGAAGTGTCTCCCTTTCTTTTGACTAATCTTGTTC
GCAAGTCTACTTTTTATTACCTGTTAGAATGCCTACTCCAGCTTGCTTCT
TGATTCTCAATTCCTGCTATTTTGACAGTGGTTGGGGTA
NNNNNNNTCCCCCNNNNNNNNCCCNCCCCNTNNNTTCCCCCCTCNCCCCC
TTCACTTNCTTACAATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTGGAGAGAATTTT
TCTTGACAAACTTCACTATATGCCTAGAAAATCTAGGCAAAAGAGGACTA
GTCAAATGCACCTAAGAATTCTTTCCTAGTTCACCCATTTCTGCCATCTT
TTTCTCTCAGTTTATCTCTCAGCATCTCTGTTTCTCTGGAACTTATATAA
ACAAACTCTGGTCCACAGAGCCTCTGCATCTCCTCGTGAAACTTTGAAGT
ATCCATGAGCTCTAACTATGGACTTTTCCTTCTAATTTAAAATGTCTATA
TTTAGCTTAATATACAAACATTTAATTTTTAGCAGGACACAGACGCTATG
AAGGAGAAAGGGAAAAGCAGGCGGAAACTCTAATGGGGGAGGTAAAAGCA
AGAATATAGATGGAGAACAAGGAAGAGACAAAGAGCACTAATGTTATTTG
CAAAAGGCACAGGAAAATGTATCATTTTATAAGTTTACACAAGTGTGCGT
GTGCGTGCGCGTATGTGCGTGCGTGATAAAGTTCATCATTCTATACGCAC
TGACCCCTATCCCATTTTTACCACTCTCTGTCAGAATCTCCTTGTTCAAA
TAACTCCCTTTTAAATTGCCGGCCTACGGAGGCCCCAGAACGCCTCCAGA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_p03.g1 MSMg01no076_p03.g1 CHROMAT_FILE:
MSMg01no076_p03.g1 PHD_FILE: MSMg01no076_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:06 2005
         (278 letters)



>mm_chr5_41613056_41613734
          Length = 679

 Score =  501 bits (259), Expect = e-146
 Identities = 274/279 (98%), Gaps = 1/279 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtggagagaa-tttttcttgacaaacttcactatatgcctagaaaatctaggcaaaa 59
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtggagagaaatttttcttgacaaacttcactatatgcctagaaaatctaggcaaaa 260

                                                                       
Query: 60  gaggactagtcaaatgcacctaagaattctttcctagttcacccatttctgccatctttt 119
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtctagtcaaatgcacctaagaattctttcctagttcacccatttctgccatctttt 320

                                                                       
Query: 120 tctctcagtttatctctcagcatctctgtttctctggaacttatataaacaaactctggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tctctcagtttatctctcagcatctctgtttctctggaacttatataaacaaattctggt 380

                                                                       
Query: 180 ccacagagcctctgcatctcctcgtgaaactttgaagtatccatgagctctaactatgga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacagagcctctgcatctcctcgtgaaactttgaagtatccatgagctctaactatgga 440

                                                  
Query: 240 cttttccttctaatttaaaatgtctatatttagcttaat 278
           ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 441 cttgtccttctaatttaaaatgtctatatttaacttaat 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 679
Length adjustment: 9
Effective length of query: 269
Effective length of database: 670
Effective search space:   180230
Effective search space used:   180230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)