CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCAGCTTCTTGTCTCTCAGGCTCACCAAACCAGGTACACAGTGCCTGCCC
TAACAGAATCACACCTGAGCCAAGGCAGCTCGGGTGGAGGTGTTCAGTGT
AGCACAAAAATGCCTTTGTAAGCCCCCAAATGCCATTCAGATATAATTGG
AAATGATTTCTGCCCAATGCCTACAGTCTTCTGCACCCAATAAGTCACTG
TATTCACAGTGGTCTCTTTATTAAACTCCTGTCCCTCCGTGTATTAGCAT
GTAACTCGATATAGCTTTTTTGGTGACTTCTTTGTCTGTAGGTAAATAGC
TCAGAGGGGATTTTTAAGCTATTTCCCCAACCCCAAGAATAGTAGTCACC
ATCACGTGAGATTTGGATTGGCGTTTACCCAGAGTATTTACTGGTAACAG
TACCCAGTATCTCACAGCACCCTAGTGGCAGGGACCTGGGAATGCTTGTA
TTACTTCCAACATGTCTCTTCTACTCCTCCAAATGGAATAATGGAGGAAA
AAGAGGGGTTGGCATCACCCTCCTCTGAACGGGAACGGGGGCCCTGTTCA
GTTCCTGTATGTTTTTTTTTTCTACTTGGATAAGAATCCTTCTTGTACTA
CAATTCTAAGTGTCTCACAATAATTCGTGTTTAATTTGTC

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTGAGCACATATATACTCAAACTTATGGG
ACACAATGAAAGCAGCACTAAGGAAAGTTCATAGCACTAAGTGCCTTCAC
AAGGAAATTAGTGAAATCTCACACAAGGAATTTAACAGCACACCTGAAAA
CATAACAAAAAGAAGCACACACCCAAGAGAAGTAGACAGCATAAGATAAT
CAAATAAAGGCTGAGATCAATAAGAACAGTACAAAGAATCAGCAAAACCA
AGAGCTGATTCTCTGAGAAAAATCAATGAAATAGACAAACCTTTAGTCAA
ACTAACTGAAAAGAAAACAGAGAAAGAATATCCAAATTATCAAAATCAGA
AATGAAGAGAGGGATACAACAACAGACAACAAGGATGTCCAAAGAAGGAT
TGGGTCTTCAAAAAATCTAAATTCCATGAAGTTGGAAACTCTCAATGAAA
TGGATGATTTTCTTGCTAGATACCATTTGCCAAAGCTGAATCAAGATAAG
GTAAACTATGTAAAGAGACTTAAAAACCCTATGGAAGTAGAAATAGTCAT
TACAAGTTTTCCACCACCACCACCACCCCATGCAAAAAAAAAATAACAAT
AAGCCTGGGCCAGATGCTTCCAGTTCACAAATGTGCCAGACGGA

Query= MSMg01no078_d24.b1 MSMg01no078_d24.b1 CHROMAT_FILE:
MSMg01no078_d24.b1 PHD_FILE: MSMg01no078_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:31 2005
         (542 letters)



>mm_chr5_41919431_41920371
          Length = 941

 Score =  957 bits (495), Expect = 0.0
 Identities = 528/539 (97%), Gaps = 1/539 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcttcttgtctctcaggctcaccaaaccaggtacacagtgcctgccctaaca 63
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaattcagcttcttgtct-tcagggtcaccaaaccaggtacacagtgcctgccctaaca 683

                                                                       
Query: 64  gaatcacacctgagccaaggcagctcgggtggaggtgttcagtgtagcacaaaaatgcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaatcacacctgagccaaggcagctcgggtggaggtgttcagtgtagcacaaaaatgcct 623

                                                                       
Query: 124 ttgtaagcccccaaatgccattcagatataattggaaatgatttctgcccaatgcctaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttgtaagcccccaaatgccattcagatataattggaaatgatttctgcccaatgcctaca 563

                                                                       
Query: 184 gtcttctgcacccaataagtcactgtattcacagtggtctctttattaaactcctgtccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtcttctgcacccaataagtcactgtattcacagtggtctctttattaaactcctgtccc 503

                                                                       
Query: 244 tccgtgtattagcatgtaactcgatatagcttttttggtgacttctttgtctgtaggtaa 303
           ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tccatgtattagcacgtaactcgatatagcttttttggtgacttctttgtctgtaggtaa 443

                                                                       
Query: 304 atagctcagaggggatttttaagctatttccccaaccccaagaatagtagtcaccatcac 363
           ||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 442 atagctcagaggtaatttttaagctatttccccaaccccaagaatagtagtctccatcat 383

                                                                       
Query: 364 gtgagatttggattggcgtttacccagagtatttactggtaacagtacccagtatctcac 423
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgagatttggattgtcgtttacccagagtatttactggtaacagtacccagtatctcac 323

                                                                       
Query: 424 agcaccctagtggcagggacctgggaatgcttgtattacttccaacatgtctcttctact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agcaccctagtggcagggacctgggaatgcttgtattacttccaacatgtctcttctact 263

                                                                      
Query: 484 cctccaaatggaataatggaggaaaaagaggggttggcatcaccctcctctgaacggga 542
           |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 262 cctccaaatggaataatggaggaaaaagagaggttggcatcaccttcctctgaacggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space:   495292
Effective search space used:   495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)