BAC Information

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BAC

Clone NameMSMg01-078J22
Chromosome5 (Build37)
Map Location 43,305,964 - 43,306,465
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078J22.T7 (MSMg01no078_j22.b1)MSMg01-078J22.TJ (MSMg01no078_j22.g1)
ACCAG299912AG299913
length689695
length of high quality
(start - end)
487 (42 - 528)502 (73 - 574)
definitionCHROMAT_FILE: MSMg01no078_j22.b1 PHD_FILE: MSMg01no078_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:00 2005CHROMAT_FILE: MSMg01no078_j22.g1 PHD_FILE: MSMg01no078_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAAAAACACTGAGATTCCA
CTTTACTCCAGTCAGAATGGCTCAGATCAAAAACTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TTCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACCTGTAGGATCCGCAATACCTCTACTGGGCATAT
ATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGTTC
ATAGCAGCCTTGTTTATAATAGCCTGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGATACATTTACACAATAGAAT
ACTACTCAGCTATTAAAAAAAATGAATTTATGCAATTCCTAGGCAAATGG
ATAGACCTGAAGGGTATCATCCTGAGTGAAGCAACCAAATCACAAAGGAA
CTCACACCATATGTATTCACTTTCTTAGGGGATATTATCCCAGAAACTTA
CGATACCCAAGATATACGATACAACTTGCCAAACGCATG
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAAAAGTTGAGAACAGAGTTCTAGAAA
AGGCAGCTGGCATAGATCAGAGATTTAGTAGGAGGCCAGCAGACAAGTAT
AAGAAAGTGATAAAAGAACATTCCATAGGAAAATTCAACACTTGTGATTT
TGGGAATCTGCTGACAGTTTAGGATTTTGACAAATGGAGAAGGTTTTCAT
GATTGGACTATGGGTATGACCTAAGGGCTGCAGAGATACACAAGAGACAA
AATTCACAGGGGTGTTTATGTCATGTGAAATTCTGGGAAAGTAGAAATGG
ACAAAGGTATGTCTGAATTGCCATCTGGTGTCACAATATACATTTCATCT
GGCAAGAACTGTGAAAGCACTATGTCCAATTTTCTGAGGAACCGCCAGAC
TGATTTCCAGAGTGGTTGTACAAGCCTGCACTCCCACCAACAATGGAGGA
GTGTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGAAATT
TTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAAGGTTGCTTT
GATTTGCTTTCCCTGTTGATCAATGATGACGAAATCTTCTCTTAAGCTTT
TCTCTTGCCTTTCACAATTCTTAAAGTACGAATCTCTCTTCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_j22.g1 MSMg01no078_j22.g1 CHROMAT_FILE:
MSMg01no078_j22.g1 PHD_FILE: MSMg01no078_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:00 2005
         (502 letters)



>mm_chr5_43305923_43306824
          Length = 902

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaaagttgagaacagagttctagaaaaggcagctggcatagatcagagatttagtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctaaaagttgagaacagagttctagaaaaggcagctggcatagatcagagatttagtagg 484

                                                                       
Query: 61  aggccagcagacaagtataagaaagtgataaaagaacattccataggaaaattcaacact 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 aggccagcagacaagtataagaaagtgataaaagaacattccatgggaaaattcaacact 424

                                                                       
Query: 121 tgtgattttgggaatctgctgacagtttaggattttgacaaatggagaaggttttcatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtgattttgggaatctgctgacagtttaggattttgacaaatggagaaggttttcatga 364

                                                                       
Query: 181 ttggactatgggtatgacctaagggctgcagagatacacaagagacaaaattcacagggg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttggactatgggtatggcctaagggctgcagagatacacaagagacaaaattcacagggg 304

                                                                       
Query: 241 tgtttatgtcatgtgaaattctgggaaagtagaaatggacaaaggtatgtctgaattgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgtttatgtcatgtgaaattctgggaaagtagaaatggacaaaggtatgtctgaattgcc 244

                                                                       
Query: 301 atctggtgtcacaatatacatttcatctggcaagaactgtgaaagcactatgtccaattt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 243 atctggtgtcacaatatacatttcatctggcaagaactgtgaaagcactatgtccaatat 184

                                                                       
Query: 361 tctgaggaaccgccagactgatttccagagtggttgtacaagcctgcactcccaccaaca 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 183 tctgaggaaccgccagactgatttccagagtggttgtacaaacctgcactcccaccaaca 124

                                                                       
Query: 421 atggaggagtgttcctctttctccacatccacgccagcatctgctgtcacctgaaatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 123 atggaggagtgttcctctttctccacatccacgccagcatctgctgtcacctgaattttt 64

                                 
Query: 481 gatcttagccattctgactggt 502
           ||||||||||||||||||||||
Sbjct: 63  gatcttagccattctgactggt 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)