BAC Information

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BAC

Clone NameMSMg01-078K02
Chromosome5 (Build37)
Map Location 133,461,308 - 133,461,668
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K02.T7 (MSMg01no078_k02.b1)MSMg01-078K02.TJ (MSMg01no078_k02.g1)
ACCAG299920AG299921
length720733
length of high quality
(start - end)
366 (47 - 412)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no078_k02.b1 PHD_FILE: MSMg01no078_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:01 2005CHROMAT_FILE: MSMg01no078_k02.g1 PHD_FILE: MSMg01no078_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATCCCTAGAACACACGATGTGAAAGGAAAGAACCCCACCTCAT
GCAAGGTGTCTTCTGACAGACATGAGTGTGCCTCCCAATCCAAAAAGCAA
ATACATCATTGTAAAACCAGAAAAAAATTTTAAGCAACAGAAATATCTTC
TAAAGGTAAGAAAAAAGGATGACAGAGTTGGAAGGAATGAGACCACCATC
TTGAACTTCTGAAAAATAGAAGCTACTGGGAAAGGAGACAGATTTGAGCT
ATGAGGCTTTTTAAAAAGAATAATCGAAATTAAAATGAACAAAGCTGGGC
GTGATGGGGCAAGCCTGCCAATCCCAGTTATTTGGAAAGGCCGAAAAGGA
TCCCAAGATCAAAGCCTGTTGGAACTACAGTGAGTTCAAGGCCAGCCTAG
ACAAGTTAAGGAGATCTTGCCTCATAAAAAAAAAAGTAAAAAGAGAGCTG
GAATGTTATTCCAAAGTATAATATCTACTTAGGACCCCCCCAGTGAGGGG
CTGGCGGTGTGGCTCAGAGCTATAGCCCCTGCCTAAAATCCTTCACCGAG
GCGCCGTCTTCGCGGCTCAGTGTTACAGTCCCTGTCTAGAATCCCCCATT
GTATGCCCCGGCACCGCGGCTCCATGGTTCAGCCCCCCGTCTAGAATTCC
CCAGGGAGGTTCTGCCACCG
TGATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATGGGTCAGGAATTGGATAGAGATAGCT
TGTCTTTGACCCATATGGTCTGGGCCTCAGATGAAAGAGTCACCGGCTGG
GGGATCATTTGTCATCTGGAGACTAATGTCATCACAGTGGTACTAAGTGG
ACAAAGGTAATTACACAAGCCCATATAATGTATGATTCTGTTCATATGAA
GTTTCCATAACTGGGAAATCTGTTGAGAGAGTGAAGTGTATTGGGGGATA
GGACTGAGTAGGAATGCCAATTTTTTCTCCCTTCATTTTTTCCTTCCTTC
CCCCTCTTTCCCCTTCCTTTTCTTTTTCTTTTTTTCTCCCCCCCCCCCCT
TTTTCTCCTTCCTTCCCCCTTTTTCCTCTTTTTTCTCCCCCCTCCCCTCC
TCCCTTCTTCCTTTTTTTTTTTTTCTTTTTTCCCTCCCCCCCTCTCCCTC
TTTTTTTTTTCTCTCTTTTTTCATTTTACCTTCTTGTATTCTTTCTATTA
TATTTTCTTTTTCTTTACCACGTACTTTTTCCTTTTTTTAATCTCCCCCC
CTTTTTTTTCCCCCTATTACCTAATTACTTCCCCACCCCCTTTTTTTCCT
ATTTTCCCTTATTTATCTCCCCTTCCCTCTCTTTTATTTTTTCTCCCCTT
CTTTTCTTTCTTTTCTTTTTTCTTTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k02.b1 MSMg01no078_k02.b1 CHROMAT_FILE:
MSMg01no078_k02.b1 PHD_FILE: MSMg01no078_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:01 2005
         (366 letters)



>mm_chr5_133461104_133461868
          Length = 765

 Score =  646 bits (334), Expect = 0.0
 Identities = 355/362 (98%), Gaps = 1/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatccctagaacacacgatgtgaaaggaaagaaccccacctcatgcaaggtgtc 64
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 gaattctatccctagaagacacgatgtgaaaggaaagaaccccacctcatgcgaggtgtc 506

                                                                       
Query: 65  ttctgacagacatgagtgtgcctcccaatccaaaaagcaaatacatcattgtaaaaccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctgacagacatgagtgtgcctcccaatccaaaaagcaaatacatcattgtaaaaccag 446

                                                                       
Query: 125 aaaaaaattttaagcaacagaaatatcttctaaaggtaagaaaaaaggatgacagagttg 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 -aaaaaattttaagcaacagaaatatcttctaaaggtaagaaaaaaggatgacagagttg 387

                                                                       
Query: 185 gaaggaatgagaccaccatcttgaacttctgaaaaatagaagctactgggaaaggagaca 244
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 386 gaaggaatgagaccaccatcttgaacatctgaaaaatagaagctactaggaaaggagaca 327

                                                                       
Query: 245 gatttgagctatgaggctttttaaaaagaataatcgaaattaaaatgaacaaagctgggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 326 gatttgagctatgaggctttttaaaaagaataatcgaaattaaaatgaacaaagctgggt 267

                                                                       
Query: 305 gtgatggggcaagcctgccaatcccagttatttggaaaggccgaaaaggatcccaagatc 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgatggggcaagcctgccaatctcagttatttggaaaggccgaaaaggatcccaagatc 207

             
Query: 365 aa 366
           ||
Sbjct: 206 aa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 765
Length adjustment: 9
Effective length of query: 357
Effective length of database: 756
Effective search space:   269892
Effective search space used:   269892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)