Query= MSMg01no078_l03.b1 MSMg01no078_l03.b1 CHROMAT_FILE:
MSMg01no078_l03.b1 PHD_FILE: MSMg01no078_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:06 2005
(396 letters)
>mm_chr5_100913872_100914666
Length = 795
Score = 750 bits (388), Expect = 0.0
Identities = 394/396 (99%), Gaps = 1/396 (0%)
Strand = Plus / Plus
Query: 1 gcaattaacaaccctataaatacaactttgcatcagtttaactttttaacatgcacttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaattaacaaccctataaatacaactttgcatcagtttaactttttaacatgcacttta 260
Query: 61 agtaatatgcccttttttagtttttacctgtactgtttttaactgttgggtctgtaacac 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaatatgccctttttttgtttttacctgtactgtttttaactgttgggtctgtaacac 320
Query: 121 agagggctgagttgtagtattaatcagttggcttcctggggtcagtgctgagacaccaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagggctgagttgtagtattaatcagttggcttcctggggtcagtgctgagacaccaat 380
Query: 181 gacaggtttcacctctggcctccctccaatggtaactactttaatttgctgcggtggtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaggtttcacctctggcctccctccaatggtaactactttaatttgctgcggtggtaa 440
Query: 241 cttagcatctcctggctgggcctgagctgtaactttctgagcctggggtagttggctatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttagcatctcctggctgggcctgagctgtaactttctgagcctggggtagttggctatg 500
Query: 301 gggtagtgctaaaacaattggtgaaccagacttgcccaaagttgttaatattaacttctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtagtgctaaaacaattggtgaaccagacttgcccaaagttgttaatattaacttctg 560
Query: 361 tccatctggtttaagggtctgatttgccaagtttaa 396
|||||||||||||||||||||||| |||||||||||
Sbjct: 561 tccatctggtttaagggtctgatt-gccaagtttaa 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 795
Length adjustment: 9
Effective length of query: 387
Effective length of database: 786
Effective search space: 304182
Effective search space used: 304182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_l03.g1 MSMg01no078_l03.g1 CHROMAT_FILE:
MSMg01no078_l03.g1 PHD_FILE: MSMg01no078_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:06 2005
(383 letters)
>mm_chr5_101086125_101086907
Length = 783
Score = 658 bits (340), Expect = 0.0
Identities = 373/384 (97%), Gaps = 1/384 (0%)
Strand = Plus / Minus
Query: 1 cagggtagccggggctccatagagaaaccttgtctcaaaacaaag-aaattatccttgtt 59
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 cagggtagccggggctccatagagaaaccttgtctcaaaacaaagaaaattatccttgtt 383
Query: 60 aatgtagagaaaaagaatacacacttaaatggggatttttttcccttttttgatttttct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aatgtagagaaaaagaatacacacttaaatggggatttttttcccttttttgatttttct 323
Query: 120 gaattacttctgatatgtctatagctgaagcttgtgcgttgaattcattagttcaaaaac 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 322 gaattacttctgatatgtctatagctgaagcttgtgtgttgaattcattagttcaaaaac 263
Query: 180 aatccgataaacctataataattaataataataataataaggccagacagatgaaggtgt 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatctgataaacctataataattaataataataataataaggccagacagatgaaggtgc 203
Query: 240 ttgcctccaagtctgatggcccgagtttgatccctaggaccttctcttgtgttgacctct 299
||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 202 ttgccaccaagtctgatggcctgagtttgatccccaggaccttctcttgtgttgacctct 143
Query: 300 gacaagtgcacatgagtgtcccttgtgtggggaccactgccagccagagaaaacatagtc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 142 gacaagtgcacatgagtgtcccttgtgtggggaccactgccagccagagaaaacacagcc 83
Query: 360 ctgtaaacctgcagccccagcagc 383
||| ||||||||||||||| ||||
Sbjct: 82 ctggaaacctgcagccccaacagc 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
