BAC Information

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BAC

Clone NameMSMg01-078L06
Chromosome5 (Build37)
Map Location 142,844,358 - 142,844,795
singlet/doubletsinglet
Overlap genenone
Upstream geneSdk1, LOC666727
Downstream geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078L06.T7 (MSMg01no078_l06.b1)MSMg01-078L06.TJ (MSMg01no078_l06.g1)
ACCAG299975AG299976
length742691
length of high quality
(start - end)
274 (43 - 316)425 (70 - 494)
definitionCHROMAT_FILE: MSMg01no078_l06.b1 PHD_FILE: MSMg01no078_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:07 2005CHROMAT_FILE: MSMg01no078_l06.g1 PHD_FILE: MSMg01no078_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAGCCGCGGAAT
TCCAGTAAATTACCAATCAAGATTGACCATCACATGGGGCTGGAGAGGCA
GCCCAACACATAAAGGCACCTCCTGCCAAGCCCAAAGACCCTAGTTCAAT
TCCCAGGACCTGCATGATAGGAGGAGACTCAACTTCTGAAAGTTGTCTTC
TGACTCCACATAGGGGCTGTGGCATGCATACCCACACATAGAAACACACT
ATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATACTATTATTATATCCTCACCTCTCTTCTCTATAACT
CTCTATACTACCTTCCCTTCCCCACACTCAATCTTACTTTCCAATTTTCT
CTACTCTATTCCTCTTCCCCTCCCCCTATTACTTCTATCTTCCCTTTTCC
TCCTTCTCTCTTCTACTCTATCCTCTCCCTCTATCTTCTTGTCCTCTTTT
TTATATATAACTTTCTTTATTACTCCAGCTTATTTCTCTTTTCTCACCCT
AAATCCAATATTTATCCTTCATTACATTATTCATTCATCTATTTCCTCTC
GTTTCCTCCGATTTTTTATTACTCTCATACACACTTTTTTATTATCCTCT
AATCTTATCTCTCTTCTCCTCCCATATTCTCCTCCTATTCTCTCTACCAT
CACATTCACCATCTTTAACTCACCATTACCTCTTTCCTTCCG
TGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGATTCCCAGTGGAATTAGAGGGGCTTTA
TAATGTTATATGACAGACTTTCTCTAGAGAGACGTAACACACACACACGT
GTGCCCACTCACCTCAGAAAGGGAATCTACAACAGACCAAATCAAGGGCC
ATACCAAATTGCAATCTGGTGAACCAATGAGTTTTTTATTGGGGTCACTT
ACAAGACAGATGCCATCACTGAAAACTCAGACCATCTAGATGAGTAGCAG
GCAGCTCCACCTTCTGAGAAATCTTGCAGTTTCAGCTGACCAGTCTCTTC
CCCAAGCAGCTGTTTCCTAATGCTATAAAGCTGAGGAGGGGCCTTTCACA
ATCTTCTAATTTGCCATTTCTCCAGACATGTGATGCTGTTTTACCTCTGG
AATCTCCTGAGCCTCTACCTCCTCCTGCCTCAGCCTCCCAAGTGCTGGGA
ATGCAGGTGTATTACCAAGCCAGATATACTTGTTTATCTCGTTAAATCTT
TTTAGAACAGGTTACAAAGGTCCGCTGACAAGGCTCAAGTGGTTAAAGGC
GCCTGCTGATCGTAATTACTTGGCTCACGGACAGTACTGTCTCAAGTCAT
TTGCCTTTTGCACTTCTAATCAATTGACATTTATTAGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_l06.g1 MSMg01no078_l06.g1 CHROMAT_FILE:
MSMg01no078_l06.g1 PHD_FILE: MSMg01no078_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:07 2005
         (425 letters)



>mm_chr5_142843971_142844795
          Length = 825

 Score =  766 bits (396), Expect = 0.0
 Identities = 421/438 (96%), Gaps = 14/438 (3%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctgattcccagtggaattagaggggctttataatgttatatgacagactttctctagaga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 825 ctgattcccagtggaattagaggggctttataatgttatatgacagactttttctaggga 766

                                                                       
Query: 62  gacgta--------------acacacacacacgtgtgcccactcacctcagaaagggaat 107
           ||||||              ||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gacgtaacacacacacacacacacacacacacgtgtgcccactcacctcagaaagggaat 706

                                                                       
Query: 108 ctacaacagaccaaatcaagggccataccaaattgcaatctggtgaaccaatgagttttt 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctacaacagaccaaatcaagggccataccaaattgcaatctggtgaaccaatgagttttt 646

                                                                       
Query: 168 tattggggtcacttacaagacagatgccatcactgaaaactcagaccatctagatgagta 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tattggggtcacttacaagacagatgccatcactgaaaactcagaccatctagatgagta 586

                                                                       
Query: 228 gcaggcagctccaccttctgagaaatcttgcagtttcagctgaccagtctcttccccaag 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gcaggcagctccaccttctgagaaatcttgcagtttcagctgaccagtctcttccccaag 526

                                                                       
Query: 288 cagctgtttcctaatgctataaagctgaggaggggcctttcacaatcttctaatttgcca 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 525 cagctgtttcctaatgctataaagctgaggaggggcctttcacaatcttctaacttgcca 466

                                                                       
Query: 348 tttctccagacatgtgatgctgttttacctctggaatctcctgagcctctacctcctcct 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttctccagacatgtgatgctgttttacctctggaatctcctgagcctctacctcctcct 406

                             
Query: 408 gcctcagcctcccaagtg 425
           ||||||||||||||||||
Sbjct: 405 gcctcagcctcccaagtg 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)