Query= MSMg01no078_o07.b1 MSMg01no078_o07.b1 CHROMAT_FILE:
MSMg01no078_o07.b1 PHD_FILE: MSMg01no078_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:21 2005
(640 letters)
>mm_chr5_55930569_55931607
Length = 1039
Score = 1152 bits (596), Expect = 0.0
Identities = 627/640 (97%), Gaps = 7/640 (1%)
Strand = Plus / Plus
Query: 5 gaattcatatatatatttatatatata----tatatatatgtatatcaaaacaatgtgaa 60
|||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 203 gaattc--atatatattcatatatataaatttatatatatgtatatcaagacaatgtgaa 260
Query: 61 ataaaatataacattcagatgctatattaaacaattaagcattattttacaggatttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaatataacattcagatgctatattaaacaattaagcattattttacaggatttaat 320
Query: 121 atcacaaccacaaactctacttctcatcaatctttctttctctcattttcctctatcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacaaccacaaactctacttctcatcaatctttctttctctcattttcctctatcttt 380
Query: 181 ttccatatatcattctcattaattttattcacttaaaactgtcctacttgagcacaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccatatatcattctcattaattttattcacttaaaactgtcctacttgagcacaggct 440
Query: 241 tctatttgctacattgttcaagtatcttattcctcccactcaataatgcccttactttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctatttgctacattgttcaagtatcttattcctcccactcaataatgcccttactttaa 500
Query: 301 atgtatacattagtatgagctagtatcttatgctttttggttctgagtcttgtctctgta 360
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 atgtatacattagtatgaaatagtatcttatgatttttggttctgagtcttgtctctgta 560
Query: 361 atcttgcagtcttccctttcattattctacaaatactcacatatatgtatgaacacattt 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 atcttgcagtcttccctttcattattctacaaatactcacatacatgtatgaacacattt 620
Query: 421 gtatacaaatatcagactttgatacttctttctcagattaagaattatcttacttatcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatacaaatatcagactttgatacttctttctcagattaagaattatcttacttatcaa 680
Query: 481 tttcatatgttcaaatatacaataatatatgattctaatacaaaaaaactctattgtttg 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tttcatatgttcaaatatacaataatatatgattctaatacaaaaaa-ctctattgtttg 739
Query: 541 tacaacatgaataccaaacgtgaactataggaactcctgaaaataatgaaatagactctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tacaacatgaataccaaacgtgaactataggaactcctgaaaataatgaaatagactctt 799
Query: 601 tgtatactttgtataatttagagaagaaaatctcttaaat 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgtatactttgtataatttagagaagaaaatctcttaaat 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_o07.g1 MSMg01no078_o07.g1 CHROMAT_FILE:
MSMg01no078_o07.g1 PHD_FILE: MSMg01no078_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:21 2005
(365 letters)
>mm_chr5_56097399_56098163
Length = 765
Score = 659 bits (341), Expect = 0.0
Identities = 359/365 (98%)
Strand = Plus / Minus
Query: 1 tatcttcaacactaggaaaaataatgggagataaagagaaggaaaagagaagggaaaagg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tatcttaaacactaggaaaaataatgggagataaagagaaggaaaagagaagggaaaagg 609
Query: 61 agatgaagaggaataggaagaagaaaagagagagagggaaagaaagcacacacaatcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agatgaagaggaataggaagaagaaaagagagagagggaaagaaagcacacacaatcaac 549
Query: 121 atgcatattctcttaaatactaaggaattttcatttctctagaatttatttatattatag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 548 atgcatattctcttaaatactaaggaattttcatttctctagaatttatttatagtatag 489
Query: 181 agaaaacagttgactgcaagatagatgttatgtaatgtaaatatgaatgaacaaataaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agaaaacagttgactgcaagatagatgttatgtaatgtaaatatgaatgaacaaataaag 429
Query: 241 agacagactttacaccaggtgttttgttgatcagcagctatattttagatatatatattt 300
|||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 428 agacagacattaccccaggtgttttgttgatcagcagctatactttagatatatatattt 369
Query: 301 tatgatttctgtttccacgaaactctcagccttatttggcaagccttctaccactgaatt 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 368 tatgatttctgtttccacgaaactctcagccttatttggcaagccctctaccactgaatt 309
Query: 361 acata 365
|||||
Sbjct: 308 acata 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
